Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 5' | -51.2 | NC_005902.1 | + | 58362 | 0.68 | 0.972414 |
Target: 5'- -gUAUUGAUGACGCau--GGAGUUAAa -3' miRNA: 3'- uaGUAGCUACUGCGgaauCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 104298 | 0.68 | 0.972414 |
Target: 5'- cAUCAUUGAUGACGgUgugaggugGGGGGUUAAa -3' miRNA: 3'- -UAGUAGCUACUGCgGaa------UCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 20090 | 0.68 | 0.972414 |
Target: 5'- uGUCAUCGAUGACauGagUUAGGAGUa-- -3' miRNA: 3'- -UAGUAGCUACUG--CggAAUCCUCGauu -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 10493 | 0.68 | 0.972414 |
Target: 5'- cAUUAUCGAUaAUGCCUUAGGAaUUAAa -3' miRNA: 3'- -UAGUAGCUAcUGCGGAAUCCUcGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 149246 | 0.68 | 0.969423 |
Target: 5'- cAUCAUUGAUGAUGCCUUAGa------ -3' miRNA: 3'- -UAGUAGCUACUGCGGAAUCcucgauu -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 122823 | 0.68 | 0.959076 |
Target: 5'- cAUCAUCGAUGAUGCUUUguguuguuaAGGAuGCc-- -3' miRNA: 3'- -UAGUAGCUACUGCGGAA---------UCCU-CGauu -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 161990 | 0.69 | 0.955149 |
Target: 5'- uAUCAUCaAUGACaCCUUAGGuGUUAAa -3' miRNA: 3'- -UAGUAGcUACUGcGGAAUCCuCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 168526 | 0.69 | 0.950974 |
Target: 5'- -aCGUugCGAUGAUGCCUUAGGAaUUAAa -3' miRNA: 3'- uaGUA--GCUACUGCGGAAUCCUcGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 43805 | 0.69 | 0.950974 |
Target: 5'- uGUUAUCGAUGACaUUUUAGGAGUUu- -3' miRNA: 3'- -UAGUAGCUACUGcGGAAUCCUCGAuu -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 20458 | 0.69 | 0.946547 |
Target: 5'- uGUCGUUGAUGcUGCCUUAaGAGUUAAc -3' miRNA: 3'- -UAGUAGCUACuGCGGAAUcCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 28725 | 0.69 | 0.941864 |
Target: 5'- aGUCAUaGAUGAUGCCUUagauuaAGGAGUa-- -3' miRNA: 3'- -UAGUAgCUACUGCGGAA------UCCUCGauu -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 16032 | 0.69 | 0.940409 |
Target: 5'- uAUCAaUGAUGGggcaucauuaacaaUGCCUUAGGAGUUAAa -3' miRNA: 3'- -UAGUaGCUACU--------------GCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 162164 | 0.69 | 0.936923 |
Target: 5'- uGUUAUUaacGAUGCCUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGcuaCUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 167521 | 0.69 | 0.936923 |
Target: 5'- cAUCAUUaAUaAUGCCUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGcUAcUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 8559 | 0.7 | 0.931722 |
Target: 5'- uGUCAUCGAcaAUGUUUUAGGAGUUAAg -3' miRNA: 3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 118539 | 0.7 | 0.931722 |
Target: 5'- uAUCAUCGAUGAUGCCUUAaagauuaaaGAGUa-- -3' miRNA: 3'- -UAGUAGCUACUGCGGAAUc--------CUCGauu -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 61550 | 0.7 | 0.920536 |
Target: 5'- -gCAUCGuUGACaauGCCUUAGGAGUg-- -3' miRNA: 3'- uaGUAGCuACUG---CGGAAUCCUCGauu -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 174700 | 0.7 | 0.914551 |
Target: 5'- cGUUAUUGAUGAUGUCUUAaGAGUUAAu -3' miRNA: 3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 68037 | 0.7 | 0.908307 |
Target: 5'- uGUCAUUGAcaAUGCUUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 66970 | 0.7 | 0.908307 |
Target: 5'- cAUCGUUGAUGAUGUgU--GGAGCUAAu -3' miRNA: 3'- -UAGUAGCUACUGCGgAauCCUCGAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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