miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 180990 0.73 0.786562
Target:  5'- uAUCAUUGAcaACGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 176155 0.74 0.726664
Target:  5'- cAUUGUUGAUGAUaCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 174700 0.7 0.914551
Target:  5'- cGUUAUUGAUGAUGUCUUAaGAGUUAAu -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 172698 0.77 0.610095
Target:  5'- uGUUGUCaAUGAUGCCUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 169883 0.83 0.288404
Target:  5'- uGUCAUUGAUGACGCCUUAaGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 168526 0.69 0.950974
Target:  5'- -aCGUugCGAUGAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- uaGUA--GCUACUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 167521 0.69 0.936923
Target:  5'- cAUCAUUaAUaAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcUAcUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 165994 0.73 0.814602
Target:  5'- uAUCAUCaAUGAUGUUUUAGGAGUUAu -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUu -5'
28277 5' -51.2 NC_005902.1 + 162164 0.69 0.936923
Target:  5'- uGUUAUUaacGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcuaCUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 161990 0.69 0.955149
Target:  5'- uAUCAUCaAUGACaCCUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGcGGAAUCCuCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 158132 0.67 0.977753
Target:  5'- cAUCAUCGAUGACaCau--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGcGgaauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 156497 0.8 0.455995
Target:  5'- cAUCAUUGAUGAUGCCUUAaGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 149484 0.66 0.990581
Target:  5'- cAUCAUCGAUGAUGUCUUAaGuGUa-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCuCGauu -5'
28277 5' -51.2 NC_005902.1 + 149286 0.84 0.261304
Target:  5'- cAUCAUCGAUGAUGCCUUAGGAuuUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUcgAUU- -5'
28277 5' -51.2 NC_005902.1 + 149246 0.68 0.969423
Target:  5'- cAUCAUUGAUGAUGCCUUAGa------ -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCcucgauu -5'
28277 5' -51.2 NC_005902.1 + 149173 0.78 0.557074
Target:  5'- cAUCAUCGAUGACaUUUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGCUACUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 144125 0.73 0.796074
Target:  5'- uAUCAU---UGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAgcuACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 143742 0.68 0.972414
Target:  5'- uGUCAUUGAUaAUGCCUUgaguuaAGGGGUUAAg -3'
miRNA:   3'- -UAGUAGCUAcUGCGGAA------UCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 143560 0.67 0.977753
Target:  5'- cAUCAUUGucaAUGACaUCUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGC---UACUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 142118 0.84 0.267879
Target:  5'- uGUCAUCGAUGAUGCUUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCuCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.