miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 67637 0.72 0.999999
Target:  5'- uUGUUGAUGACaGUau--AGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUG-CAgaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 58811 0.72 0.999999
Target:  5'- -aUCAAUGAUG-Cgu-AGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 90511 0.73 0.999997
Target:  5'- -aUCGAUGACGaugu-GGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 25282 0.73 0.999997
Target:  5'- cGUCAAcaACGcUUUAGGAGUUAAAGg -3'
miRNA:   3'- aCAGUUacUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 91280 0.73 0.999997
Target:  5'- -aUCAAUaAUGcCUUAGGAGUUAAGGg -3'
miRNA:   3'- acAGUUAcUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 53073 0.73 0.999997
Target:  5'- uUGUUGAUGACGUUUUaugucauuaacaacgGuauGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGCAGAA---------------U---UCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 15971 0.73 0.999996
Target:  5'- cGUUGAUGAUGU----GGAGUUAAAGg -3'
miRNA:   3'- aCAGUUACUGCAgaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 154690 0.73 0.999996
Target:  5'- cUGUUauuGAUGAUGUUU--GGAGUUAAAGg -3'
miRNA:   3'- -ACAG---UUACUGCAGAauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 162165 0.73 0.999996
Target:  5'- gUGUUAuuaacGAUGcCUUAGGAGUUAAAGu -3'
miRNA:   3'- -ACAGUua---CUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 82139 0.73 0.999996
Target:  5'- -aUUAAUGAUGUUgc-GGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCAGaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 114775 0.73 0.999992
Target:  5'- aUGUCAucgGUGACGaugu-AGAGUUAAAGg -3'
miRNA:   3'- -ACAGU---UACUGCagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 149177 0.74 0.999988
Target:  5'- -aUCGAUGACaUUUUAGGAGUUAAu- -3'
miRNA:   3'- acAGUUACUGcAGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 33171 0.74 0.999988
Target:  5'- uUGUCAucGACGauacUUUAGGAGUUAAAGa -3'
miRNA:   3'- -ACAGUuaCUGCa---GAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 16093 0.74 0.999988
Target:  5'- uUGUUAauaAUGAUGcCUUAGGAGUUAAu- -3'
miRNA:   3'- -ACAGU---UACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 33475 0.74 0.999988
Target:  5'- uUGUCAucGACGauacUUUAGGAGUUAAAGa -3'
miRNA:   3'- -ACAGUuaCUGCa---GAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 93506 0.74 0.999983
Target:  5'- uUGUCAAUGACacUUUAGGAGUcAGGGg -3'
miRNA:   3'- -ACAGUUACUGcaGAAUUCUCAaUUUC- -5'
28279 5' -40.5 NC_005902.1 + 33278 0.75 0.999956
Target:  5'- cGUCGAUGACaauau-AGAGUUAAAGg -3'
miRNA:   3'- aCAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 33368 0.75 0.999956
Target:  5'- cGUCGAUGACaauau-AGAGUUAAAGg -3'
miRNA:   3'- aCAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 150070 0.75 0.99994
Target:  5'- uUGUCAucaacGAUGUUUUAGGAGUUuAAGg -3'
miRNA:   3'- -ACAGUua---CUGCAGAAUUCUCAAuUUC- -5'
28279 5' -40.5 NC_005902.1 + 96075 0.75 0.99994
Target:  5'- uUGUUGAUaAUGcCUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUAcUGCaGAAUUCUCAAUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.