miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 58364 0.66 1
Target:  5'- -aUUGAUGACG-Cau-GGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 58370 0.98 0.435465
Target:  5'- gUGUCAAUaACGUCUUAAGAGUUAAAGa -3'
miRNA:   3'- -ACAGUUAcUGCAGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 58543 0.67 1
Target:  5'- gUGUUAuUGAuaaCGcCUUGGGAGUUAAAc -3'
miRNA:   3'- -ACAGUuACU---GCaGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 58637 1.13 0.081194
Target:  5'- gUGUCAAUGACGUCUUAAGAGUUAAAGa -3'
miRNA:   3'- -ACAGUUACUGCAGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 58811 0.72 0.999999
Target:  5'- -aUCAAUGAUG-Cgu-AGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 63324 0.66 1
Target:  5'- -aUCAAUGAUGaugcCUUAAaAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCa---GAAUUcUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 63466 0.66 1
Target:  5'- cGUCGAUGcCaUCUUAAGAauUUAAAGg -3'
miRNA:   3'- aCAGUUACuGcAGAAUUCUc-AAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 67210 0.67 1
Target:  5'- -aUCAAUaacaAUGcCUUAGGAGUUAAAGa -3'
miRNA:   3'- acAGUUAc---UGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 67406 0.84 0.959603
Target:  5'- uUGUUAuUGAUGcCUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUuACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 67462 0.82 0.978941
Target:  5'- cUGUCAAUGAUGcCUUAGaAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGCaGAAUUcUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 67637 0.72 0.999999
Target:  5'- uUGUUGAUGACaGUau--AGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUG-CAgaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 68038 0.68 1
Target:  5'- aUGUCAuUGACaaugcUUUAGGAGUUAAAa -3'
miRNA:   3'- -ACAGUuACUGca---GAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 68092 0.75 0.999893
Target:  5'- -aUCGAUGAUGcCUUAAGAGUccAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAa-UUUC- -5'
28279 5' -40.5 NC_005902.1 + 68451 0.66 1
Target:  5'- aUGUCAuuaAUGAUG-C---AGAGUUAAAGg -3'
miRNA:   3'- -ACAGU---UACUGCaGaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 71891 0.92 0.675658
Target:  5'- -aUCAAUGACGUgUUAGGAGUUAAGGa -3'
miRNA:   3'- acAGUUACUGCAgAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 74853 0.68 1
Target:  5'- --aCAAUGuaaaGCGUCaucaacaacgcaUUAGGAGUUAAAGg -3'
miRNA:   3'- acaGUUAC----UGCAG------------AAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 75968 0.72 0.999999
Target:  5'- gUGUCAuUGAUGgugcUUUAGGAGUUAAGa -3'
miRNA:   3'- -ACAGUuACUGCa---GAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 76557 0.66 1
Target:  5'- cGUUAAUGAUcaugu-GGAGUUAAAGa -3'
miRNA:   3'- aCAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 76692 0.68 1
Target:  5'- -uUCAGaGAUGgaauauugcuuuaacUCUUGAGAGUUAAAGc -3'
miRNA:   3'- acAGUUaCUGC---------------AGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 78789 0.94 0.607789
Target:  5'- cGUUGAUGAUGUCUUAAGAGUUAAGa -3'
miRNA:   3'- aCAGUUACUGCAGAAUUCUCAAUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.