miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 33171 0.74 0.999988
Target:  5'- uUGUCAucGACGauacUUUAGGAGUUAAAGa -3'
miRNA:   3'- -ACAGUuaCUGCa---GAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 33278 0.75 0.999956
Target:  5'- cGUCGAUGACaauau-AGAGUUAAAGg -3'
miRNA:   3'- aCAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 33368 0.75 0.999956
Target:  5'- cGUCGAUGACaauau-AGAGUUAAAGg -3'
miRNA:   3'- aCAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 33475 0.74 0.999988
Target:  5'- uUGUCAucGACGauacUUUAGGAGUUAAAGa -3'
miRNA:   3'- -ACAGUuaCUGCa---GAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 34963 0.72 1
Target:  5'- gGUUAAUGAUGuaaaUCUUcAGAGUUGAAu -3'
miRNA:   3'- aCAGUUACUGC----AGAAuUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 36341 0.7 1
Target:  5'- uUGUau-UGACGauaacccCUUAGGAGUUAAGGg -3'
miRNA:   3'- -ACAguuACUGCa------GAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 37358 0.82 0.983522
Target:  5'- -aUCGAUGAUGcCUUAGGAGUUAAAa -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 37549 0.66 1
Target:  5'- -cUCGAUGACGcCUUguguuauugaugacaAcauGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAA---------------U---UCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 39613 0.68 1
Target:  5'- cUGUCAGUGACcuuucaGUUUUuaaAAGAGUUAu-- -3'
miRNA:   3'- -ACAGUUACUG------CAGAA---UUCUCAAUuuc -5'
28279 5' -40.5 NC_005902.1 + 42360 0.71 1
Target:  5'- uUGUCAAUGACaUgUUuGGAGUUAAc- -3'
miRNA:   3'- -ACAGUUACUGcAgAAuUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 43801 0.67 1
Target:  5'- -aUCGAUGACaUUUUAGGAGUUu--- -3'
miRNA:   3'- acAGUUACUGcAGAAUUCUCAAuuuc -5'
28279 5' -40.5 NC_005902.1 + 47084 0.67 1
Target:  5'- uUGUCAAUGAUGauau--GAGUUAAAu -3'
miRNA:   3'- -ACAGUUACUGCagaauuCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 48205 0.82 0.981337
Target:  5'- -aUCGAUGACGcCUUAGGAGcUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCaAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 48276 0.68 1
Target:  5'- uUGUCAAUGACacaaaGUauugcugacgaugcCUUAGGAGUUAuaaAAGg -3'
miRNA:   3'- -ACAGUUACUG-----CA--------------GAAUUCUCAAU---UUC- -5'
28279 5' -40.5 NC_005902.1 + 48546 0.77 0.999606
Target:  5'- uUGUUGAUGAUGUau--AGAGUUAAAGa -3'
miRNA:   3'- -ACAGUUACUGCAgaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 50195 0.81 0.988927
Target:  5'- -aUUGAUGAUGcCUUAGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 53073 0.73 0.999997
Target:  5'- uUGUUGAUGACGUUUUaugucauuaacaacgGuauGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGCAGAA---------------U---UCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 55204 0.81 0.988927
Target:  5'- -aUUAAUGAUGcCUUAGGGGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 55344 0.7 1
Target:  5'- uUGUUGAUaACaUCUUAAGAGUUAAAa -3'
miRNA:   3'- -ACAGUUAcUGcAGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 58195 0.72 0.999999
Target:  5'- -aUCAAUGAUG-Cgu-AGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGaauUCUCAAUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.