miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 106110 0.83 0.973478
Target:  5'- -aUUAAUGAUGcCUUAGGAGUUAAAGa -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 67462 0.82 0.978941
Target:  5'- cUGUCAAUGAUGcCUUAGaAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGCaGAAUUcUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 48205 0.82 0.981337
Target:  5'- -aUCGAUGACGcCUUAGGAGcUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCaAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 11278 0.82 0.981337
Target:  5'- -aUCAAUGAUGcCUUAGGAGUUAAAu -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 156501 0.82 0.983522
Target:  5'- -aUUGAUGAUGcCUUAAGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 165990 0.82 0.983522
Target:  5'- -aUCAAUGAUGUUUUAGGAGUUAu-- -3'
miRNA:   3'- acAGUUACUGCAGAAUUCUCAAUuuc -5'
28279 5' -40.5 NC_005902.1 + 37358 0.82 0.983522
Target:  5'- -aUCGAUGAUGcCUUAGGAGUUAAAa -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 50195 0.81 0.988927
Target:  5'- -aUUGAUGAUGcCUUAGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 55204 0.81 0.988927
Target:  5'- -aUUAAUGAUGcCUUAGGGGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 104492 0.8 0.991683
Target:  5'- -aUCAAUGAUGcCUUAAGAGUUAAc- -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 99697 0.8 0.994769
Target:  5'- uUGUUGAUGACGcCUUAGGAaUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGCaGAAUUCUcAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 20204 0.8 0.994769
Target:  5'- -aUCAAUGAUGcCUUAGGAGUUAAc- -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 20431 0.8 0.994769
Target:  5'- -aUCAAUGAUGcCUUAGGAGUUAAc- -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 3341 0.8 0.995561
Target:  5'- uUGUCAGUGACGUauacGGAGUUAAu- -3'
miRNA:   3'- -ACAGUUACUGCAgaauUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 114567 0.8 0.99585
Target:  5'- aGUCAAUGAUGUgaaacauuagugaugCuUUAAGAGUUAAAGg -3'
miRNA:   3'- aCAGUUACUGCA---------------G-AAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 113949 0.79 0.996253
Target:  5'- uUGUUAAUGAUGcugcUUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGCa---GAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 100361 0.79 0.996854
Target:  5'- -aUCAAUGAUGcCUUAAGAGUaAAGGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAaUUUC- -5'
28279 5' -40.5 NC_005902.1 + 139892 0.79 0.996854
Target:  5'- aUGUCAuUGAUaauaUCUUAGGAGUUAAAGu -3'
miRNA:   3'- -ACAGUuACUGc---AGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 176153 0.79 0.997373
Target:  5'- uUGUUGAUGAUacCUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGcaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 109326 0.79 0.997819
Target:  5'- gUGUCAGUGAUcuuucaauUUUUAAGAGUUAAAGa -3'
miRNA:   3'- -ACAGUUACUGc-------AGAAUUCUCAAUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.