miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 58637 1.13 0.081194
Target:  5'- gUGUCAAUGACGUCUUAAGAGUUAAAGa -3'
miRNA:   3'- -ACAGUUACUGCAGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 116972 1.01 0.310277
Target:  5'- cGUCAAUGAUGUUUUAGGAGUUAAAGg -3'
miRNA:   3'- aCAGUUACUGCAGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 58370 0.98 0.435465
Target:  5'- gUGUCAAUaACGUCUUAAGAGUUAAAGa -3'
miRNA:   3'- -ACAGUUAcUGCAGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 26419 0.96 0.486732
Target:  5'- cGUCAAUGAUGcCUUAGGAGUUAAGGg -3'
miRNA:   3'- aCAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 78789 0.94 0.607789
Target:  5'- cGUUGAUGAUGUCUUAAGAGUUAAGa -3'
miRNA:   3'- aCAGUUACUGCAGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 71891 0.92 0.675658
Target:  5'- -aUCAAUGACGUgUUAGGAGUUAAGGa -3'
miRNA:   3'- acAGUUACUGCAgAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 143565 0.9 0.783929
Target:  5'- uUGUCAAUGACaUCUUAGGAGUUAAc- -3'
miRNA:   3'- -ACAGUUACUGcAGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 90701 0.89 0.823256
Target:  5'- -aUCGAUGAUGcCUUAAGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 17016 0.89 0.823256
Target:  5'- -aUCAAUGAUGcCUUAGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 83831 0.88 0.859184
Target:  5'- aUGUUGAUGAUaUCUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGcAGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 11210 0.87 0.86756
Target:  5'- aUGUCAuugAUGAUGcCUUAAGAGUUAAGGa -3'
miRNA:   3'- -ACAGU---UACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 172700 0.87 0.891103
Target:  5'- uUGUCAAUGAUGcCUUAGGGGUUAAc- -3'
miRNA:   3'- -ACAGUUACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 169884 0.87 0.891103
Target:  5'- gUGUCAuugAUGACGcCUUAAGAGUUAAAa -3'
miRNA:   3'- -ACAGU---UACUGCaGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 114952 0.86 0.912141
Target:  5'- -aUCAAUGAUGcCUUGGGAGUUAGGGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 98916 0.85 0.924722
Target:  5'- uUGUUAAUGACacCUUAAGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGcaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 174700 0.85 0.941398
Target:  5'- cGUUauuGAUGAUGUCUUAAGAGUUAAu- -3'
miRNA:   3'- aCAG---UUACUGCAGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 67406 0.84 0.959603
Target:  5'- uUGUUAuUGAUGcCUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUuACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 27637 0.83 0.963461
Target:  5'- cGgCGAUGAUGcCUUAGGAGUUAAAGa -3'
miRNA:   3'- aCaGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 27942 0.83 0.963461
Target:  5'- cGgCGAUGAUGcCUUAGGAGUUAAAGa -3'
miRNA:   3'- aCaGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 91962 0.83 0.963461
Target:  5'- gUGUCAuugAUGAUGUCUUAAaGGUUAAAGg -3'
miRNA:   3'- -ACAGU---UACUGCAGAAUUcUCAAUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.