Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28279 | 5' | -40.5 | NC_005902.1 | + | 76557 | 0.66 | 1 |
Target: 5'- cGUUAAUGAUcaugu-GGAGUUAAAGa -3' miRNA: 3'- aCAGUUACUGcagaauUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 58364 | 0.66 | 1 |
Target: 5'- -aUUGAUGACG-Cau-GGAGUUAAAGg -3' miRNA: 3'- acAGUUACUGCaGaauUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 134137 | 0.66 | 1 |
Target: 5'- cGUUGAUGACaUCUUAGGAaUUAGu- -3' miRNA: 3'- aCAGUUACUGcAGAAUUCUcAAUUuc -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 167343 | 0.66 | 1 |
Target: 5'- -aUCAAUGAUGcUUUAGGAaUUAAAGg -3' miRNA: 3'- acAGUUACUGCaGAAUUCUcAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 127775 | 0.66 | 1 |
Target: 5'- --aCAuUGuuGUCUUAGGAGUUGGGu -3' miRNA: 3'- acaGUuACugCAGAAUUCUCAAUUUc -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 180975 | 0.66 | 1 |
Target: 5'- uUGUCAAcgacaaaguaucauUGACaacgCuUUAGGAGUUAAAGg -3' miRNA: 3'- -ACAGUU--------------ACUGca--G-AAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 63466 | 0.66 | 1 |
Target: 5'- cGUCGAUGcCaUCUUAAGAauUUAAAGg -3' miRNA: 3'- aCAGUUACuGcAGAAUUCUc-AAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 167525 | 0.66 | 1 |
Target: 5'- -aUUAAUaAUGcCUUAGGAGUUAAAGc -3' miRNA: 3'- acAGUUAcUGCaGAAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 169926 | 0.66 | 1 |
Target: 5'- --cCGAcGACGUgUUuGGGGUUAAAGg -3' miRNA: 3'- acaGUUaCUGCAgAAuUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 93703 | 0.66 | 1 |
Target: 5'- gUGUCAuUGACaauaauguAGAGUUAAAGg -3' miRNA: 3'- -ACAGUuACUGcagaau--UCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 63324 | 0.66 | 1 |
Target: 5'- -aUCAAUGAUGaugcCUUAAaAGUUAAAGg -3' miRNA: 3'- acAGUUACUGCa---GAAUUcUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 85618 | 0.66 | 1 |
Target: 5'- uUGUCAAUGAUGaCaUAAauuAGUUAAAGg -3' miRNA: 3'- -ACAGUUACUGCaGaAUUc--UCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 37549 | 0.66 | 1 |
Target: 5'- -cUCGAUGACGcCUUguguuauugaugacaAcauGGAGUUAAAGg -3' miRNA: 3'- acAGUUACUGCaGAA---------------U---UCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 158128 | 0.66 | 1 |
Target: 5'- -aUCGAUGACacau--GGAGUUAAAGg -3' miRNA: 3'- acAGUUACUGcagaauUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 68451 | 0.66 | 1 |
Target: 5'- aUGUCAuuaAUGAUG-C---AGAGUUAAAGg -3' miRNA: 3'- -ACAGU---UACUGCaGaauUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 149290 | 0.67 | 1 |
Target: 5'- -aUCGAUGAUGcCUUAGGAuUUAAAa -3' miRNA: 3'- acAGUUACUGCaGAAUUCUcAAUUUc -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 67210 | 0.67 | 1 |
Target: 5'- -aUCAAUaacaAUGcCUUAGGAGUUAAAGa -3' miRNA: 3'- acAGUUAc---UGCaGAAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 12888 | 0.67 | 1 |
Target: 5'- cUGUCAcuAUGcucacuuguAUGUCUUAAGAuUUAAAGg -3' miRNA: 3'- -ACAGU--UAC---------UGCAGAAUUCUcAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 181187 | 0.67 | 1 |
Target: 5'- uUGUCAAUGAuacuuUGUCgUUGAcaacagcauGGGUUAAAGg -3' miRNA: 3'- -ACAGUUACU-----GCAG-AAUU---------CUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 104147 | 0.67 | 1 |
Target: 5'- -aUCAAUGAUGcUUUAAGAaUUAAAGg -3' miRNA: 3'- acAGUUACUGCaGAAUUCUcAAUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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