Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28279 | 5' | -40.5 | NC_005902.1 | + | 58637 | 1.13 | 0.081194 |
Target: 5'- gUGUCAAUGACGUCUUAAGAGUUAAAGa -3' miRNA: 3'- -ACAGUUACUGCAGAAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 139892 | 0.79 | 0.996854 |
Target: 5'- aUGUCAuUGAUaauaUCUUAGGAGUUAAAGu -3' miRNA: 3'- -ACAGUuACUGc---AGAAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 48546 | 0.77 | 0.999606 |
Target: 5'- uUGUUGAUGAUGUau--AGAGUUAAAGa -3' miRNA: 3'- -ACAGUUACUGCAgaauUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 167525 | 0.66 | 1 |
Target: 5'- -aUUAAUaAUGcCUUAGGAGUUAAAGc -3' miRNA: 3'- acAGUUAcUGCaGAAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 172700 | 0.87 | 0.891103 |
Target: 5'- uUGUCAAUGAUGcCUUAGGGGUUAAc- -3' miRNA: 3'- -ACAGUUACUGCaGAAUUCUCAAUUuc -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 174700 | 0.85 | 0.941398 |
Target: 5'- cGUUauuGAUGAUGUCUUAAGAGUUAAu- -3' miRNA: 3'- aCAG---UUACUGCAGAAUUCUCAAUUuc -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 91962 | 0.83 | 0.963461 |
Target: 5'- gUGUCAuugAUGAUGUCUUAAaGGUUAAAGg -3' miRNA: 3'- -ACAGU---UACUGCAGAAUUcUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 106110 | 0.83 | 0.973478 |
Target: 5'- -aUUAAUGAUGcCUUAGGAGUUAAAGa -3' miRNA: 3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 37358 | 0.82 | 0.983522 |
Target: 5'- -aUCGAUGAUGcCUUAGGAGUUAAAa -3' miRNA: 3'- acAGUUACUGCaGAAUUCUCAAUUUc -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 100361 | 0.79 | 0.996854 |
Target: 5'- -aUCAAUGAUGcCUUAAGAGUaAAGGg -3' miRNA: 3'- acAGUUACUGCaGAAUUCUCAaUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 99697 | 0.8 | 0.994769 |
Target: 5'- uUGUUGAUGACGcCUUAGGAaUUAAAGg -3' miRNA: 3'- -ACAGUUACUGCaGAAUUCUcAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 48205 | 0.82 | 0.981337 |
Target: 5'- -aUCGAUGACGcCUUAGGAGcUAAAGg -3' miRNA: 3'- acAGUUACUGCaGAAUUCUCaAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 143565 | 0.9 | 0.783929 |
Target: 5'- uUGUCAAUGACaUCUUAGGAGUUAAc- -3' miRNA: 3'- -ACAGUUACUGcAGAAUUCUCAAUUuc -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 20204 | 0.8 | 0.994769 |
Target: 5'- -aUCAAUGAUGcCUUAGGAGUUAAc- -3' miRNA: 3'- acAGUUACUGCaGAAUUCUCAAUUuc -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 83831 | 0.88 | 0.859184 |
Target: 5'- aUGUUGAUGAUaUCUUAGGAGUUAAAGg -3' miRNA: 3'- -ACAGUUACUGcAGAAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 67462 | 0.82 | 0.978941 |
Target: 5'- cUGUCAAUGAUGcCUUAGaAGUUAAAGg -3' miRNA: 3'- -ACAGUUACUGCaGAAUUcUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 114567 | 0.8 | 0.99585 |
Target: 5'- aGUCAAUGAUGUgaaacauuagugaugCuUUAAGAGUUAAAGg -3' miRNA: 3'- aCAGUUACUGCA---------------G-AAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 109326 | 0.79 | 0.997819 |
Target: 5'- gUGUCAGUGAUcuuucaauUUUUAAGAGUUAAAGa -3' miRNA: 3'- -ACAGUUACUGc-------AGAAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 11210 | 0.87 | 0.86756 |
Target: 5'- aUGUCAuugAUGAUGcCUUAAGAGUUAAGGa -3' miRNA: 3'- -ACAGU---UACUGCaGAAUUCUCAAUUUC- -5' |
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28279 | 5' | -40.5 | NC_005902.1 | + | 27637 | 0.83 | 0.963461 |
Target: 5'- cGgCGAUGAUGcCUUAGGAGUUAAAGa -3' miRNA: 3'- aCaGUUACUGCaGAAUUCUCAAUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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