miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 96075 0.75 0.99994
Target:  5'- uUGUUGAUaAUGcCUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUAcUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 48546 0.77 0.999606
Target:  5'- uUGUUGAUGAUGUau--AGAGUUAAAGa -3'
miRNA:   3'- -ACAGUUACUGCAgaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 48205 0.82 0.981337
Target:  5'- -aUCGAUGACGcCUUAGGAGcUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCaAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 11210 0.87 0.86756
Target:  5'- aUGUCAuugAUGAUGcCUUAAGAGUUAAGGa -3'
miRNA:   3'- -ACAGU---UACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 34963 0.72 1
Target:  5'- gGUUAAUGAUGuaaaUCUUcAGAGUUGAAu -3'
miRNA:   3'- aCAGUUACUGC----AGAAuUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 149177 0.74 0.999988
Target:  5'- -aUCGAUGACaUUUUAGGAGUUAAu- -3'
miRNA:   3'- acAGUUACUGcAGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 139892 0.79 0.996854
Target:  5'- aUGUCAuUGAUaauaUCUUAGGAGUUAAAGu -3'
miRNA:   3'- -ACAGUuACUGc---AGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 83831 0.88 0.859184
Target:  5'- aUGUUGAUGAUaUCUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGcAGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 16093 0.74 0.999988
Target:  5'- uUGUUAauaAUGAUGcCUUAGGAGUUAAu- -3'
miRNA:   3'- -ACAGU---UACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 143565 0.9 0.783929
Target:  5'- uUGUCAAUGACaUCUUAGGAGUUAAc- -3'
miRNA:   3'- -ACAGUUACUGcAGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 109326 0.79 0.997819
Target:  5'- gUGUCAGUGAUcuuucaauUUUUAAGAGUUAAAGa -3'
miRNA:   3'- -ACAGUUACUGc-------AGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 33278 0.75 0.999956
Target:  5'- cGUCGAUGACaauau-AGAGUUAAAGg -3'
miRNA:   3'- aCAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 20204 0.8 0.994769
Target:  5'- -aUCAAUGAUGcCUUAGGAGUUAAc- -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 37358 0.82 0.983522
Target:  5'- -aUCGAUGAUGcCUUAGGAGUUAAAa -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 91962 0.83 0.963461
Target:  5'- gUGUCAuugAUGAUGUCUUAAaGGUUAAAGg -3'
miRNA:   3'- -ACAGU---UACUGCAGAAUUcUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 172700 0.87 0.891103
Target:  5'- uUGUCAAUGAUGcCUUAGGGGUUAAc- -3'
miRNA:   3'- -ACAGUUACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 20457 0.71 1
Target:  5'- gUGUCGuUGAUGcugcCUUAAGAGUUAAc- -3'
miRNA:   3'- -ACAGUuACUGCa---GAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 12829 0.72 1
Target:  5'- -aUCAAUGACG-CUUugucauugaugauguGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAu--------------UCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 90511 0.73 0.999997
Target:  5'- -aUCGAUGACGaugu-GGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 114775 0.73 0.999992
Target:  5'- aUGUCAucgGUGACGaugu-AGAGUUAAAGg -3'
miRNA:   3'- -ACAGU---UACUGCagaauUCUCAAUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.