miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 3341 0.8 0.995561
Target:  5'- uUGUCAGUGACGUauacGGAGUUAAu- -3'
miRNA:   3'- -ACAGUUACUGCAgaauUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 8560 0.71 1
Target:  5'- aUGUCAucGACaauGUUUUAGGAGUUAAGa -3'
miRNA:   3'- -ACAGUuaCUG---CAGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 10522 0.71 1
Target:  5'- aGUUAAcaACaUCUUAAGAGUUAAAGg -3'
miRNA:   3'- aCAGUUacUGcAGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 11210 0.87 0.86756
Target:  5'- aUGUCAuugAUGAUGcCUUAAGAGUUAAGGa -3'
miRNA:   3'- -ACAGU---UACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 11278 0.82 0.981337
Target:  5'- -aUCAAUGAUGcCUUAGGAGUUAAAu -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 12829 0.72 1
Target:  5'- -aUCAAUGACG-CUUugucauugaugauguGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAu--------------UCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 12888 0.67 1
Target:  5'- cUGUCAcuAUGcucacuuguAUGUCUUAAGAuUUAAAGg -3'
miRNA:   3'- -ACAGU--UAC---------UGCAGAAUUCUcAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 15971 0.73 0.999996
Target:  5'- cGUUGAUGAUGU----GGAGUUAAAGg -3'
miRNA:   3'- aCAGUUACUGCAgaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 16031 0.69 1
Target:  5'- -aUCAAUGAUGgggCaucauuaacaaugccUUAGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCa--G---------------AAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 16093 0.74 0.999988
Target:  5'- uUGUUAauaAUGAUGcCUUAGGAGUUAAu- -3'
miRNA:   3'- -ACAGU---UACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 17016 0.89 0.823256
Target:  5'- -aUCAAUGAUGcCUUAGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 20204 0.8 0.994769
Target:  5'- -aUCAAUGAUGcCUUAGGAGUUAAc- -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 20269 0.76 0.999761
Target:  5'- -aUCAuUGACauGUCUUAAGAGUUAAAu -3'
miRNA:   3'- acAGUuACUG--CAGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 20431 0.8 0.994769
Target:  5'- -aUCAAUGAUGcCUUAGGAGUUAAc- -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 20457 0.71 1
Target:  5'- gUGUCGuUGAUGcugcCUUAAGAGUUAAc- -3'
miRNA:   3'- -ACAGUuACUGCa---GAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 25282 0.73 0.999997
Target:  5'- cGUCAAcaACGcUUUAGGAGUUAAAGg -3'
miRNA:   3'- aCAGUUacUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 26419 0.96 0.486732
Target:  5'- cGUCAAUGAUGcCUUAGGAGUUAAGGg -3'
miRNA:   3'- aCAGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 26537 0.78 0.998199
Target:  5'- cGUCAuugAUGAUGcCUUAGGAGUUAAu- -3'
miRNA:   3'- aCAGU---UACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 27637 0.83 0.963461
Target:  5'- cGgCGAUGAUGcCUUAGGAGUUAAAGa -3'
miRNA:   3'- aCaGUUACUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 27942 0.83 0.963461
Target:  5'- cGgCGAUGAUGcCUUAGGAGUUAAAGa -3'
miRNA:   3'- aCaGUUACUGCaGAAUUCUCAAUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.