miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 181187 0.67 1
Target:  5'- uUGUCAAUGAuacuuUGUCgUUGAcaacagcauGGGUUAAAGg -3'
miRNA:   3'- -ACAGUUACU-----GCAG-AAUU---------CUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 180975 0.66 1
Target:  5'- uUGUCAAcgacaaaguaucauUGACaacgCuUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUU--------------ACUGca--G-AAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 177488 0.68 1
Target:  5'- cUGUUGAUGAguUGUCaacaaugcuUUGAGAGUUAGAa -3'
miRNA:   3'- -ACAGUUACU--GCAG---------AAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 176153 0.79 0.997373
Target:  5'- uUGUUGAUGAUacCUUAGGAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGcaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 175142 0.71 1
Target:  5'- -aUCAAUGAUaUUUUAGGAGUUAAu- -3'
miRNA:   3'- acAGUUACUGcAGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 175056 0.68 1
Target:  5'- uUGUUGAUGAUGUgcagugUUaAAGGGUUAAAGa -3'
miRNA:   3'- -ACAGUUACUGCA------GAaUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 174700 0.85 0.941398
Target:  5'- cGUUauuGAUGAUGUCUUAAGAGUUAAu- -3'
miRNA:   3'- aCAG---UUACUGCAGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 172700 0.87 0.891103
Target:  5'- uUGUCAAUGAUGcCUUAGGGGUUAAc- -3'
miRNA:   3'- -ACAGUUACUGCaGAAUUCUCAAUUuc -5'
28279 5' -40.5 NC_005902.1 + 171017 0.67 1
Target:  5'- gUGUCAuUGAUgcuGUUUUAAGuGUUAAAa -3'
miRNA:   3'- -ACAGUuACUG---CAGAAUUCuCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 169926 0.66 1
Target:  5'- --cCGAcGACGUgUUuGGGGUUAAAGg -3'
miRNA:   3'- acaGUUaCUGCAgAAuUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 169884 0.87 0.891103
Target:  5'- gUGUCAuugAUGACGcCUUAAGAGUUAAAa -3'
miRNA:   3'- -ACAGU---UACUGCaGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 167525 0.66 1
Target:  5'- -aUUAAUaAUGcCUUAGGAGUUAAAGc -3'
miRNA:   3'- acAGUUAcUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 167343 0.66 1
Target:  5'- -aUCAAUGAUGcUUUAGGAaUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUcAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 166289 0.78 0.998795
Target:  5'- uUGUUAAUGACaUCUUAGaAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGcAGAAUUcUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 166094 0.69 1
Target:  5'- gUGUUAAUGACacCUUAGaAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGcaGAAUUcUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 165990 0.82 0.983522
Target:  5'- -aUCAAUGAUGUUUUAGGAGUUAu-- -3'
miRNA:   3'- acAGUUACUGCAGAAUUCUCAAUuuc -5'
28279 5' -40.5 NC_005902.1 + 162165 0.73 0.999996
Target:  5'- gUGUUAuuaacGAUGcCUUAGGAGUUAAAGu -3'
miRNA:   3'- -ACAGUua---CUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 161986 0.72 1
Target:  5'- -aUCAAUGACacCUUAGGuGUUAAAGg -3'
miRNA:   3'- acAGUUACUGcaGAAUUCuCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 158128 0.66 1
Target:  5'- -aUCGAUGACacau--GGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 156501 0.82 0.983522
Target:  5'- -aUUGAUGAUGcCUUAAGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUCAAUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.