miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 97178 0.93 0.720203
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 65755 1.09 0.162838
Target:  5'- cUUUAACACCUGAACUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 46938 0.67 1
Target:  5'- gUUAAUACCUaAGCUAUAUgcaagcauagcaaGUGAGUa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUA-------------UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 157852 0.7 1
Target:  5'- aUUUAACACCUaAGCUAUAUAUu---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 99559 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 32978 0.67 1
Target:  5'- gUUAACACCUaAACUAUAUAc----- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 41984 0.68 1
Target:  5'- gUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 170535 0.71 1
Target:  5'- uUUUAACACCUaAACUAUAUAUa---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 1267 0.71 1
Target:  5'- --cAACACCUaGGCUAUAUAUaAAUGa -3'
miRNA:   3'- aaaUUGUGGAcUUGAUAUAUAcUUAC- -5'
28280 3' -38.9 NC_005902.1 + 156341 0.75 0.999996
Target:  5'- uUUUAACAUUUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 92014 0.77 0.999919
Target:  5'- --aAAUACCUaAGCUAUAUAUGAGUa -3'
miRNA:   3'- aaaUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 170591 0.78 0.999809
Target:  5'- -gUAACACCUGAcCUAUAUAUGc--- -3'
miRNA:   3'- aaAUUGUGGACUuGAUAUAUACuuac -5'
28280 3' -38.9 NC_005902.1 + 174596 0.82 0.993206
Target:  5'- gUUAACACCUaAGCUAUAUAcGAAUGa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUaCUUAC- -5'
28280 3' -38.9 NC_005902.1 + 169514 0.85 0.963228
Target:  5'- cUUUAACACCUGAGCUAUAUAUcucaGGUGu -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUAc---UUAC- -5'
28280 3' -38.9 NC_005902.1 + 167158 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 1499 0.84 0.979174
Target:  5'- -cUAACACCUGAGCUAUAUAUa---- -3'
miRNA:   3'- aaAUUGUGGACUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 66003 0.83 0.990762
Target:  5'- cUUUAACACCUGAGCUAUAUGc----- -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 172851 0.7 1
Target:  5'- -cUAAUACCUaAGCUAUAUauGUGAGUa -3'
miRNA:   3'- aaAUUGUGGAcUUGAUAUA--UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 167392 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 184839 0.7 1
Target:  5'- uUUUAACcCCUaAGCUAUAUAcGAAUGa -3'
miRNA:   3'- -AAAUUGuGGAcUUGAUAUAUaCUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.