Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28280 | 3' | -38.9 | NC_005902.1 | + | 1267 | 0.71 | 1 |
Target: 5'- --cAACACCUaGGCUAUAUAUaAAUGa -3' miRNA: 3'- aaaUUGUGGAcUUGAUAUAUAcUUAC- -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 156341 | 0.75 | 0.999996 |
Target: 5'- uUUUAACAUUUaAGCUAUAUAUGAAUa -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 80737 | 0.78 | 0.999804 |
Target: 5'- cUUUAACACCUaAGCUAUAUacaaacaaaugcaGUGAGUGg -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUA-------------UACUUAC- -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 163390 | 0.87 | 0.940273 |
Target: 5'- uUUUAACAUCUaAGCUAUAUAUGAAUGa -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 143645 | 0.68 | 1 |
Target: 5'- aUUGACACCUaAGCUAUAUAc----- -3' miRNA: 3'- aAAUUGUGGAcUUGAUAUAUacuuac -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 50213 | 0.71 | 1 |
Target: 5'- cUUUAACACCUaAGCUAUAUAUa---- -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 42241 | 0.75 | 0.999992 |
Target: 5'- cUUAACACCUaAGCUAUAUAcaaaUGAGUa -3' miRNA: 3'- aAAUUGUGGAcUUGAUAUAU----ACUUAc -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 170703 | 0.87 | 0.922837 |
Target: 5'- cUUUAACACCUaAGCUAUAUAUGAAUa -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 170535 | 0.71 | 1 |
Target: 5'- uUUUAACACCUaAACUAUAUAUa---- -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 97178 | 0.93 | 0.720203 |
Target: 5'- cUUUAACACCUaAGCUAUAUAUGAAUGa -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 147595 | 0.75 | 0.999995 |
Target: 5'- -gUAACACCUaAGCUAUAUAUaAAUGa -3' miRNA: 3'- aaAUUGUGGAcUUGAUAUAUAcUUAC- -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 3077 | 0.71 | 1 |
Target: 5'- aUUUAACACCUaAGCUAUAUAUa---- -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 92014 | 0.77 | 0.999919 |
Target: 5'- --aAAUACCUaAGCUAUAUAUGAGUa -3' miRNA: 3'- aaaUUGUGGAcUUGAUAUAUACUUAc -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 170591 | 0.78 | 0.999809 |
Target: 5'- -gUAACACCUGAcCUAUAUAUGc--- -3' miRNA: 3'- aaAUUGUGGACUuGAUAUAUACuuac -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 174596 | 0.82 | 0.993206 |
Target: 5'- gUUAACACCUaAGCUAUAUAcGAAUGa -3' miRNA: 3'- aAAUUGUGGAcUUGAUAUAUaCUUAC- -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 169514 | 0.85 | 0.963228 |
Target: 5'- cUUUAACACCUGAGCUAUAUAUcucaGGUGu -3' miRNA: 3'- -AAAUUGUGGACUUGAUAUAUAc---UUAC- -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 32978 | 0.67 | 1 |
Target: 5'- gUUAACACCUaAACUAUAUAc----- -3' miRNA: 3'- aAAUUGUGGAcUUGAUAUAUacuuac -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 41984 | 0.68 | 1 |
Target: 5'- gUUUAACACCUaAGCUAUAUAc----- -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 135928 | 0.69 | 1 |
Target: 5'- --gAACGcCCUGAugUAUuagacacuUAUGAAUGg -3' miRNA: 3'- aaaUUGU-GGACUugAUAu-------AUACUUAC- -5' |
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28280 | 3' | -38.9 | NC_005902.1 | + | 78213 | 0.7 | 1 |
Target: 5'- cUUUAACAUCUaAGCUAUAUAcGAAUa -3' miRNA: 3'- -AAAUUGUGGAcUUGAUAUAUaCUUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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