miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 95639 0.78 0.999585
Target:  5'- --aAACACCUaAGCUGUAUAUGAAc- -3'
miRNA:   3'- aaaUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 90842 0.78 0.999677
Target:  5'- cUUUAACACCUaAAUUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 80737 0.78 0.999804
Target:  5'- cUUUAACACCUaAGCUAUAUacaaacaaaugcaGUGAGUGg -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUA-------------UACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 170591 0.78 0.999809
Target:  5'- -gUAACACCUGAcCUAUAUAUGc--- -3'
miRNA:   3'- aaAUUGUGGACUuGAUAUAUACuuac -5'
28280 3' -38.9 NC_005902.1 + 86263 0.77 0.999855
Target:  5'- cUUUAACAUCUaAGCUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 85908 0.77 0.999855
Target:  5'- cUUUAACAUCUaAGCUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 105945 0.77 0.999888
Target:  5'- uUUUAACACCUaAGCUAUAUAcaaauaaaugcaaUGAGUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU-------------ACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 92014 0.77 0.999919
Target:  5'- --aAAUACCUaAGCUAUAUAUGAGUa -3'
miRNA:   3'- aaaUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 20361 0.76 0.999956
Target:  5'- cUUUAACACCUaAGCUAUAUAcGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUaCUUAc -5'
28280 3' -38.9 NC_005902.1 + 116634 0.76 0.999977
Target:  5'- uUUUAACACCUaAGCUAUAUacaaGUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUA----UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 8417 0.76 0.999984
Target:  5'- uUUUAACACCUaAACUAUAUAcaaaUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU----ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 42241 0.75 0.999992
Target:  5'- cUUAACACCUaAGCUAUAUAcaaaUGAGUa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAU----ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 147595 0.75 0.999995
Target:  5'- -gUAACACCUaAGCUAUAUAUaAAUGa -3'
miRNA:   3'- aaAUUGUGGAcUUGAUAUAUAcUUAC- -5'
28280 3' -38.9 NC_005902.1 + 156341 0.75 0.999996
Target:  5'- uUUUAACAUUUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 91548 0.74 0.999998
Target:  5'- cUUAAUACCUaAGCUAUGUAcaaaUGAGUGc -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAU----ACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 101075 0.74 0.999998
Target:  5'- cUUUAACAUCUacACUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcuUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 167392 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 172851 0.7 1
Target:  5'- -cUAAUACCUaAGCUAUAUauGUGAGUa -3'
miRNA:   3'- aaAUUGUGGAcUUGAUAUA--UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 107459 0.7 1
Target:  5'- uUUUAACcCUUGuACUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGuGGACuUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 61623 0.66 1
Target:  5'- cUUUAACAUCUaAGCUAUAUAcaaaugauUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU--------ACUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.