miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 153648 0.67 1
Target:  5'- aUUUAACACUUaAACUAUAUAcGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUaCUUac -5'
28280 3' -38.9 NC_005902.1 + 50291 0.67 1
Target:  5'- gUUAAUACCUaAGCUAUAUacaaGUGAGc- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUA----UACUUac -5'
28280 3' -38.9 NC_005902.1 + 116877 0.67 1
Target:  5'- gUUUAACACCUaAACUAUAUGc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 92410 0.67 1
Target:  5'- aUUUAAUACCUaAGCUAUAUAcaaacaaucauaaUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU-------------ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 122038 0.67 1
Target:  5'- aUUUAACACCauuuauuauaAGCUAaAUGUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGac--------UUGAUaUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 29020 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 39515 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 42475 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 80984 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 114645 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 52775 0.67 1
Target:  5'- uUUUAACACCUaAGUUAUAUaaaGUGAAUGc -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUA---UACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 32978 0.67 1
Target:  5'- gUUAACACCUaAACUAUAUAc----- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 104412 0.68 1
Target:  5'- cUUUAACACCUaAGCUAUAUAa----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 71704 0.68 1
Target:  5'- cUUUAACACCUaGGCUAUAUAa----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 45081 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 158095 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAa----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 41984 0.68 1
Target:  5'- gUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 143645 0.68 1
Target:  5'- aUUGACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 142234 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 52574 0.68 1
Target:  5'- cUUUAACACCUaAGCUAUAUAcaaauaaauguagcGAGUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUa-------------CUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.