miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 170772 0.66 1
Target:  5'- gUUAAUGCUUaAGCUAUAUacauGUGAGUGu -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUA----UACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 61623 0.66 1
Target:  5'- cUUUAACAUCUaAGCUAUAUAcaaaugauUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU--------ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 124727 0.66 1
Target:  5'- -aUAACACUUGGAUauugAUAUGAAa- -3'
miRNA:   3'- aaAUUGUGGACUUGaua-UAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 66996 0.66 1
Target:  5'- cUUUAACACUUaAACUAUAaAUGAGc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUaUACUUac -5'
28280 3' -38.9 NC_005902.1 + 178345 0.66 1
Target:  5'- ---uACACCUGAAUgcauugAUGUGggUu -3'
miRNA:   3'- aaauUGUGGACUUGaua---UAUACuuAc -5'
28280 3' -38.9 NC_005902.1 + 146837 0.66 1
Target:  5'- --gAAUACCUaAGCUAUAUAcGAGUa -3'
miRNA:   3'- aaaUUGUGGAcUUGAUAUAUaCUUAc -5'
28280 3' -38.9 NC_005902.1 + 169732 0.66 1
Target:  5'- -gUAACACCUGAGaUAUAUAgcucaGGUGu -3'
miRNA:   3'- aaAUUGUGGACUUgAUAUAUac---UUAC- -5'
28280 3' -38.9 NC_005902.1 + 87310 0.66 1
Target:  5'- cUUUAACcCCUaAGCUAUAUaAUGAGUa -3'
miRNA:   3'- -AAAUUGuGGAcUUGAUAUA-UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 98888 0.66 1
Target:  5'- cUUAAUACCUaAGCUAUAUAUa---- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 50291 0.67 1
Target:  5'- gUUAAUACCUaAGCUAUAUacaaGUGAGc- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUA----UACUUac -5'
28280 3' -38.9 NC_005902.1 + 99559 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 91860 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 47238 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 32978 0.67 1
Target:  5'- gUUAACACCUaAACUAUAUAc----- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 13185 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 114645 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 80984 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 42475 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 29020 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 116877 0.67 1
Target:  5'- gUUUAACACCUaAACUAUAUGc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.