miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 1267 0.71 1
Target:  5'- --cAACACCUaGGCUAUAUAUaAAUGa -3'
miRNA:   3'- aaaUUGUGGAcUUGAUAUAUAcUUAC- -5'
28280 3' -38.9 NC_005902.1 + 1387 0.71 1
Target:  5'- cUUUAACACCUaAGCUGUAUAUa---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 1499 0.84 0.979174
Target:  5'- -cUAACACCUGAGCUAUAUAUa---- -3'
miRNA:   3'- aaAUUGUGGACUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 3077 0.71 1
Target:  5'- aUUUAACACCUaAGCUAUAUAUa---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 3316 0.84 0.976494
Target:  5'- uUUUAACACCUaAGCUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 3685 0.71 1
Target:  5'- uUUUAACACCUaAGCUAUAUAcaaaUGAGc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU----ACUUac -5'
28280 3' -38.9 NC_005902.1 + 5628 0.7 1
Target:  5'- cUUUAACACCUaAGCU-UAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAuAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 8417 0.76 0.999984
Target:  5'- uUUUAACACCUaAACUAUAUAcaaaUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU----ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 13185 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 13433 0.87 0.922837
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 17125 0.71 1
Target:  5'- cUUUAACACCUaAGCUAUAUAuuUGuuUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU--ACuuAC- -5'
28280 3' -38.9 NC_005902.1 + 20361 0.76 0.999956
Target:  5'- cUUUAACACCUaAGCUAUAUAcGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUaCUUAc -5'
28280 3' -38.9 NC_005902.1 + 20531 0.71 1
Target:  5'- aUUAACACCUaAGCUAUAUAUa---- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 21170 0.8 0.997618
Target:  5'- cUUUAACACUUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 23259 0.69 1
Target:  5'- cUUUAACACCUaAGCUAUAUAUu---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 23714 0.68 1
Target:  5'- cUUUAACACUUaAGCUAUAUAcaacUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU----ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 26508 0.73 1
Target:  5'- uUUUAAUACCUaAGCUAUAUAUaAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcUUAC- -5'
28280 3' -38.9 NC_005902.1 + 27883 0.67 1
Target:  5'- gUUAAUGCCUaAGCUAUAUAUGc--- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUACuuac -5'
28280 3' -38.9 NC_005902.1 + 29020 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 29342 0.73 1
Target:  5'- cUUUAAUACCUaAACUAuaUAUAUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAU--AUAUACUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.