miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 184839 0.7 1
Target:  5'- uUUUAACcCCUaAGCUAUAUAcGAAUGa -3'
miRNA:   3'- -AAAUUGuGGAcUUGAUAUAUaCUUAC- -5'
28280 3' -38.9 NC_005902.1 + 178345 0.66 1
Target:  5'- ---uACACCUGAAUgcauugAUGUGggUu -3'
miRNA:   3'- aaauUGUGGACUUGaua---UAUACuuAc -5'
28280 3' -38.9 NC_005902.1 + 174596 0.82 0.993206
Target:  5'- gUUAACACCUaAGCUAUAUAcGAAUGa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUaCUUAC- -5'
28280 3' -38.9 NC_005902.1 + 172851 0.7 1
Target:  5'- -cUAAUACCUaAGCUAUAUauGUGAGUa -3'
miRNA:   3'- aaAUUGUGGAcUUGAUAUA--UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 170941 0.86 0.945465
Target:  5'- aUUAACACCUGAAUUAUAUAUGcAAUu -3'
miRNA:   3'- aAAUUGUGGACUUGAUAUAUAC-UUAc -5'
28280 3' -38.9 NC_005902.1 + 170825 0.71 1
Target:  5'- cUUUAACACCUaAGCUAUAUAUaAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcUUAc -5'
28280 3' -38.9 NC_005902.1 + 170772 0.66 1
Target:  5'- gUUAAUGCUUaAGCUAUAUacauGUGAGUGu -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUA----UACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 170703 0.87 0.922837
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 170591 0.78 0.999809
Target:  5'- -gUAACACCUGAcCUAUAUAUGc--- -3'
miRNA:   3'- aaAUUGUGGACUuGAUAUAUACuuac -5'
28280 3' -38.9 NC_005902.1 + 170535 0.71 1
Target:  5'- uUUUAACACCUaAACUAUAUAUa---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 169732 0.66 1
Target:  5'- -gUAACACCUGAGaUAUAUAgcucaGGUGu -3'
miRNA:   3'- aaAUUGUGGACUUgAUAUAUac---UUAC- -5'
28280 3' -38.9 NC_005902.1 + 169514 0.85 0.963228
Target:  5'- cUUUAACACCUGAGCUAUAUAUcucaGGUGu -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUAc---UUAC- -5'
28280 3' -38.9 NC_005902.1 + 167392 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 167158 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 163633 0.69 1
Target:  5'- gUUAACACCUaAGCUAUAUAUu---- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 163390 0.87 0.940273
Target:  5'- uUUUAACAUCUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 162961 0.88 0.902606
Target:  5'- cUUUAAUACCUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 162270 0.68 1
Target:  5'- cUUUAACAUCUaAACUAUAUaAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUA-UACUUac -5'
28280 3' -38.9 NC_005902.1 + 158095 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAa----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 157852 0.7 1
Target:  5'- aUUUAACACCUaAGCUAUAUAUu---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.