miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 65755 1.09 0.162838
Target:  5'- cUUUAACACCUGAACUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 42241 0.75 0.999992
Target:  5'- cUUAACACCUaAGCUAUAUAcaaaUGAGUa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAU----ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 156341 0.75 0.999996
Target:  5'- uUUUAACAUUUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 61623 0.66 1
Target:  5'- cUUUAACAUCUaAGCUAUAUAcaaaugauUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU--------ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 169514 0.85 0.963228
Target:  5'- cUUUAACACCUGAGCUAUAUAUcucaGGUGu -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUAc---UUAC- -5'
28280 3' -38.9 NC_005902.1 + 54053 0.84 0.979174
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 174596 0.82 0.993206
Target:  5'- gUUAACACCUaAGCUAUAUAcGAAUGa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUaCUUAC- -5'
28280 3' -38.9 NC_005902.1 + 21170 0.8 0.997618
Target:  5'- cUUUAACACUUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 170591 0.78 0.999809
Target:  5'- -gUAACACCUGAcCUAUAUAUGc--- -3'
miRNA:   3'- aaAUUGUGGACUuGAUAUAUACuuac -5'
28280 3' -38.9 NC_005902.1 + 8417 0.76 0.999984
Target:  5'- uUUUAACACCUaAACUAUAUAcaaaUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU----ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 105945 0.77 0.999888
Target:  5'- uUUUAACACCUaAGCUAUAUAcaaauaaaugcaaUGAGUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU-------------ACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 80737 0.78 0.999804
Target:  5'- cUUUAACACCUaAGCUAUAUacaaacaaaugcaGUGAGUGg -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUA-------------UACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 97178 0.93 0.720203
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 92014 0.77 0.999919
Target:  5'- --aAAUACCUaAGCUAUAUAUGAGUa -3'
miRNA:   3'- aaaUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 170703 0.87 0.922837
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 110914 0.79 0.999158
Target:  5'- cUUUuAUACCUaAGCUAUAUAUGAGUGg -3'
miRNA:   3'- -AAAuUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 116634 0.76 0.999977
Target:  5'- uUUUAACACCUaAGCUAUAUacaaGUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUA----UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 147595 0.75 0.999995
Target:  5'- -gUAACACCUaAGCUAUAUAUaAAUGa -3'
miRNA:   3'- aaAUUGUGGAcUUGAUAUAUAcUUAC- -5'
28280 3' -38.9 NC_005902.1 + 163390 0.87 0.940273
Target:  5'- uUUUAACAUCUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 34715 0.82 0.993206
Target:  5'- uUUUAACACCUauACUAUAUAUGAAg- -3'
miRNA:   3'- -AAAUUGUGGAcuUGAUAUAUACUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.