miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 65755 1.09 0.162838
Target:  5'- cUUUAACACCUGAACUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 97178 0.93 0.720203
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 41203 0.92 0.775286
Target:  5'- cUUUAGCACCUaAGCUAUAUGUGAGUGu -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 162961 0.88 0.902606
Target:  5'- cUUUAAUACCUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 170703 0.87 0.922837
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 13433 0.87 0.922837
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 163390 0.87 0.940273
Target:  5'- uUUUAACAUCUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 170941 0.86 0.945465
Target:  5'- aUUAACACCUGAAUUAUAUAUGcAAUu -3'
miRNA:   3'- aAAUUGUGGACUUGAUAUAUAC-UUAc -5'
28280 3' -38.9 NC_005902.1 + 146183 0.86 0.950352
Target:  5'- cUUUAACACUUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 169514 0.85 0.963228
Target:  5'- cUUUAACACCUGAGCUAUAUAUcucaGGUGu -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUAc---UUAC- -5'
28280 3' -38.9 NC_005902.1 + 3316 0.84 0.976494
Target:  5'- uUUUAACACCUaAGCUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 157036 0.84 0.979174
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 1499 0.84 0.979174
Target:  5'- -cUAACACCUGAGCUAUAUAUa---- -3'
miRNA:   3'- aaAUUGUGGACUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 54053 0.84 0.979174
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 66003 0.83 0.990762
Target:  5'- cUUUAACACCUGAGCUAUAUGc----- -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 34715 0.82 0.993206
Target:  5'- uUUUAACACCUauACUAUAUAUGAAg- -3'
miRNA:   3'- -AAAUUGUGGAcuUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 174596 0.82 0.993206
Target:  5'- gUUAACACCUaAGCUAUAUAcGAAUGa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUaCUUAC- -5'
28280 3' -38.9 NC_005902.1 + 21170 0.8 0.997618
Target:  5'- cUUUAACACUUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 76061 0.8 0.99804
Target:  5'- cUUUAAUACCUGAACUAUAUAcaaacGAGUa -3'
miRNA:   3'- -AAAUUGUGGACUUGAUAUAUa----CUUAc -5'
28280 3' -38.9 NC_005902.1 + 110914 0.79 0.999158
Target:  5'- cUUUuAUACCUaAGCUAUAUAUGAGUGg -3'
miRNA:   3'- -AAAuUGUGGAcUUGAUAUAUACUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.