miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 29700 0.69 1
Target:  5'- uUUUAACACCUaAGCUAUAUAUu---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 29818 0.72 1
Target:  5'- uUUUAACACCUaAGCUAUAUacaaacaagcauaGUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUA-------------UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 32978 0.67 1
Target:  5'- gUUAACACCUaAACUAUAUAc----- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 34715 0.82 0.993206
Target:  5'- uUUUAACACCUauACUAUAUAUGAAg- -3'
miRNA:   3'- -AAAUUGUGGAcuUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 34962 0.7 1
Target:  5'- cUUAACACCUaAGCUAUAUAUa---- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 39099 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 39515 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 41203 0.92 0.775286
Target:  5'- cUUUAGCACCUaAGCUAUAUGUGAGUGu -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 41984 0.68 1
Target:  5'- gUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 42241 0.75 0.999992
Target:  5'- cUUAACACCUaAGCUAUAUAcaaaUGAGUa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAU----ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 42475 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 45081 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 45327 0.71 1
Target:  5'- -aUAACACCUaAGCUAUAUAcGAAc- -3'
miRNA:   3'- aaAUUGUGGAcUUGAUAUAUaCUUac -5'
28280 3' -38.9 NC_005902.1 + 46938 0.67 1
Target:  5'- gUUAAUACCUaAGCUAUAUgcaagcauagcaaGUGAGUa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUA-------------UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 47238 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 48351 0.69 1
Target:  5'- gUUAACAUCUaAGCUAUAUAUGu--- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUACuuac -5'
28280 3' -38.9 NC_005902.1 + 48817 0.69 1
Target:  5'- uUUUAACACCUaAACUAUAUAUu---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 50213 0.71 1
Target:  5'- cUUUAACACCUaAGCUAUAUAUa---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 50291 0.67 1
Target:  5'- gUUAAUACCUaAGCUAUAUacaaGUGAGc- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUA----UACUUac -5'
28280 3' -38.9 NC_005902.1 + 50436 0.71 1
Target:  5'- cUUUAACACCUaAGCUAUAUAUa---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.