miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 28957 0.7 0.974559
Target:  5'- uGCuau-GCuGUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuacuCG-UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 54365 0.7 0.971674
Target:  5'- uGCucauuUGuGUauGUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGu----ACuCG--UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 110136 0.7 0.968561
Target:  5'- cGCuAUGuuuGCAUAUAGCUUAGGUcUUAa -3'
miRNA:   3'- uCG-UACu--CGUAUAUCGAGUCCAcAAU- -5'
28280 5' -48.8 NC_005902.1 + 52362 0.71 0.96162
Target:  5'- -uUAUuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUAcuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 92073 0.71 0.96162
Target:  5'- -uUAUuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUAcuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 34740 0.71 0.96162
Target:  5'- gAGUGU-AGCAacuaaauauaUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAcUCGU----------AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 20148 0.71 0.957779
Target:  5'- -uUAUucGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUAcuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 162621 0.71 0.957779
Target:  5'- uGUAcuUGuuuGUAUAUAGCUUGGGUGUUAa -3'
miRNA:   3'- uCGU--ACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 39302 0.71 0.949327
Target:  5'- ---uUGuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucguACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 170762 0.71 0.949327
Target:  5'- aAGCuauauacauGUGAGUguauAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCG---------UACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 3235 0.72 0.944707
Target:  5'- --aAUGAGUAUAUAGCUUAGaUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 146172 0.72 0.944707
Target:  5'- aAGCuauauaugaAUGAGUAUAUAGCUUAGaUGUUAa -3'
miRNA:   3'- -UCG---------UACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 6226 0.72 0.944707
Target:  5'- --aAUGAGUAUAUAGCUUAGuUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 167182 0.72 0.939819
Target:  5'- aAGC----GUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGuacuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 113815 0.72 0.939819
Target:  5'- aAGUAUGuaUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCGUACucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 50491 0.72 0.929233
Target:  5'- gAGUGUGuGUAUcUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCGUACuCGUAuAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 147624 0.72 0.923532
Target:  5'- cAGUaaGUGAGUGUAUAGCUUAGaUGUUAa -3'
miRNA:   3'- -UCG--UACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 148270 0.73 0.917558
Target:  5'- aAGCAU-AGCA---AGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAcUCGUauaUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 42453 0.73 0.917558
Target:  5'- -uCAUuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUAcuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 58752 0.73 0.917558
Target:  5'- cAGCgaGUGAGUAUAUAGCUUcaGUGUUAa -3'
miRNA:   3'- -UCG--UACUCGUAUAUCGAGucCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.