miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 51639 0.68 0.99285
Target:  5'- cAGCAagUGAGUAUAUAGCUUAGa----- -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCcacaau -5'
28280 5' -48.8 NC_005902.1 + 23688 0.68 0.99285
Target:  5'- gAGUAUGuaaguaAGUAUAUAGaUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAC------UCGUAUAUCgAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 69281 0.68 0.991738
Target:  5'- -----aAGCAUAUuaAGCUUAGGUGUUAa -3'
miRNA:   3'- ucguacUCGUAUA--UCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 63579 0.68 0.991738
Target:  5'- --aGUGAGUGUAUAGCUUAGaGaUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUC-C-ACAAU- -5'
28280 5' -48.8 NC_005902.1 + 98669 0.68 0.991738
Target:  5'- cAGCGaaUGAGUauauAUAUAGCUUAGGUaUUAa -3'
miRNA:   3'- -UCGU--ACUCG----UAUAUCGAGUCCAcAAU- -5'
28280 5' -48.8 NC_005902.1 + 8440 0.68 0.990494
Target:  5'- --aAUGAGUAUAucaaauaaUAGUUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGUAU--------AUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 97658 0.68 0.990494
Target:  5'- aAGUGUaauaAGUaaGUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAc---UCG--UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 5413 0.68 0.990494
Target:  5'- uGCuUGuucaUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuACuc--GUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 47154 0.68 0.990494
Target:  5'- uGCuAUGcuuGCAUAUAGCUUAGGUaUUAa -3'
miRNA:   3'- uCG-UACu--CGUAUAUCGAGUCCAcAAU- -5'
28280 5' -48.8 NC_005902.1 + 1159 0.68 0.990494
Target:  5'- aAGC-UGuauacaaacaAGCAUAUauacAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGuAC----------UCGUAUA----UCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 146805 0.69 0.989107
Target:  5'- aAGCA--AGUAUAUAGCUUAGaUGUUAg -3'
miRNA:   3'- -UCGUacUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 3598 0.69 0.989107
Target:  5'- cAGCuAUGuuGUauGUAUAGCUUAGGUGUa- -3'
miRNA:   3'- -UCG-UACu-CG--UAUAUCGAGUCCACAau -5'
28280 5' -48.8 NC_005902.1 + 108934 0.69 0.989107
Target:  5'- uAGCgaGUGAGUAUAUaAGCUUAaGUGUUAg -3'
miRNA:   3'- -UCG--UACUCGUAUA-UCGAGUcCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 51038 0.69 0.989107
Target:  5'- cAGagaGUGAGUAUAUAGUUUAGaUGUUAa -3'
miRNA:   3'- -UCg--UACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 87217 0.69 0.987567
Target:  5'- cAGCAagUGAGUAUAUAGCaUAaGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGaGUcCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 169523 0.69 0.985864
Target:  5'- ---cUGAGCuAUAUAuCUCAGGUGUUAc -3'
miRNA:   3'- ucguACUCG-UAUAUcGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 16900 0.69 0.98379
Target:  5'- aAGUA--AGCAuaucaaacaaauaUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUacUCGU-------------AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 43768 0.69 0.981929
Target:  5'- gAGCA--AGUAUAUAGCaUAGGUGUUu -3'
miRNA:   3'- -UCGUacUCGUAUAUCGaGUCCACAAu -5'
28280 5' -48.8 NC_005902.1 + 116841 0.7 0.977224
Target:  5'- ------uGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucguacuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 29196 0.7 0.974559
Target:  5'- uGUAUucguuuGUGUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGUAcu----CGUAUAUCGAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.