miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 29196 0.7 0.974559
Target:  5'- uGUAUucguuuGUGUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGUAcu----CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 29479 0.81 0.522262
Target:  5'- aAGCAuagUGAGUaaauAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU---ACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 29603 0.77 0.737567
Target:  5'- uGCuUGuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 33189 0.81 0.532781
Target:  5'- --aGUGAGUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 34740 0.71 0.96162
Target:  5'- gAGUGU-AGCAacuaaauauaUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAcUCGU----------AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 35033 0.74 0.883671
Target:  5'- uAGUgaAUGAGUAUAUAaCUUAGGUGUUAa -3'
miRNA:   3'- -UCG--UACUCGUAUAUcGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 37183 0.67 0.997717
Target:  5'- uAGCAaauaAGUAUAUAGCUUAGGUa--- -3'
miRNA:   3'- -UCGUac--UCGUAUAUCGAGUCCAcaau -5'
28280 5' -48.8 NC_005902.1 + 39302 0.71 0.949327
Target:  5'- ---uUGuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucguACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 39320 0.75 0.816668
Target:  5'- uGCAacacuUGuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGU-----ACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 41192 0.67 0.995488
Target:  5'- aAGCuauauGUGAGUguAUAUAGCUUAGGUaUUAa -3'
miRNA:   3'- -UCG-----UACUCG--UAUAUCGAGUCCAcAAU- -5'
28280 5' -48.8 NC_005902.1 + 42196 0.86 0.311427
Target:  5'- --aGUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 42251 0.85 0.334953
Target:  5'- aAGCuauauacaaAUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG---------UACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 42453 0.73 0.917558
Target:  5'- -uCAUuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUAcuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 43768 0.69 0.981929
Target:  5'- gAGCA--AGUAUAUAGCaUAGGUGUUu -3'
miRNA:   3'- -UCGUacUCGUAUAUCGaGUCCACAAu -5'
28280 5' -48.8 NC_005902.1 + 45113 0.75 0.825806
Target:  5'- uGCuUGuucGUAUAUAGCUUAGGUGUUAu -3'
miRNA:   3'- uCGuACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 45298 0.8 0.597216
Target:  5'- uAGCAaGuaAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUaC--UCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 47154 0.68 0.990494
Target:  5'- uGCuAUGcuuGCAUAUAGCUUAGGUaUUAa -3'
miRNA:   3'- uCG-UACu--CGUAUAUCGAGUCCAcAAU- -5'
28280 5' -48.8 NC_005902.1 + 47400 0.76 0.807339
Target:  5'- cGgGUGAGUAUAUAGCUUAaGUGUUAa -3'
miRNA:   3'- uCgUACUCGUAUAUCGAGUcCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 47453 0.79 0.651774
Target:  5'- aGGaGUGuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCgUACuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 48136 0.66 0.998426
Target:  5'- --aAUGAGCAcauaUAUAGCUUAGaUGUUAa -3'
miRNA:   3'- ucgUACUCGU----AUAUCGAGUCcACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.