miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 1159 0.68 0.990494
Target:  5'- aAGC-UGuauacaaacaAGCAUAUauacAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGuAC----------UCGUAUA----UCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 1275 0.82 0.48106
Target:  5'- aGGCuauauauaaAUGAGUauAUAUAGCUCAGGUGUUAg -3'
miRNA:   3'- -UCG---------UACUCG--UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 3235 0.72 0.944707
Target:  5'- --aAUGAGUAUAUAGCUUAGaUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 3289 0.67 0.995488
Target:  5'- --aGUGuaUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucgUACucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 3470 0.73 0.898019
Target:  5'- uGCucauuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuacu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 3598 0.69 0.989107
Target:  5'- cAGCuAUGuuGUauGUAUAGCUUAGGUGUa- -3'
miRNA:   3'- -UCG-UACu-CG--UAUAUCGAGUCCACAau -5'
28280 5' -48.8 NC_005902.1 + 5413 0.68 0.990494
Target:  5'- uGCuUGuucaUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuACuc--GUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 6226 0.72 0.944707
Target:  5'- --aAUGAGUAUAUAGCUUAGuUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 7814 0.67 0.995488
Target:  5'- --aAUGAGUAUAUAaUUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUcGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 8440 0.68 0.990494
Target:  5'- --aAUGAGUAUAucaaauaaUAGUUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGUAU--------AUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 13401 0.88 0.248459
Target:  5'- cGCAaaUGGGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGU--ACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 16900 0.69 0.98379
Target:  5'- aAGUA--AGCAuaucaaacaaauaUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUacUCGU-------------AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 20148 0.71 0.957779
Target:  5'- -uUAUucGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUAcuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 20314 0.67 0.995488
Target:  5'- cGCuuauuUGuaUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGu----ACucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 21527 0.73 0.917558
Target:  5'- uAGUAaGAGUAUAUAGCUUAGaUGUUAa -3'
miRNA:   3'- -UCGUaCUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 23474 0.8 0.564758
Target:  5'- aAGUGUGAaUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUACUcGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 23688 0.68 0.99285
Target:  5'- gAGUAUGuaaguaAGUAUAUAGaUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAC------UCGUAUAUCgAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 25152 0.81 0.501475
Target:  5'- uAGCAagUGAGUAUAUAGCUUAGGgGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 28805 0.73 0.898019
Target:  5'- uGCucuuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuacu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 28957 0.7 0.974559
Target:  5'- uGCuau-GCuGUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuacuCG-UAUAUCGAGUCCACAAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.