miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 65789 1.08 0.014992
Target:  5'- cAGCAUGAGCAUAUAGCUCAGGUGUUAa -3'
miRNA:   3'- -UCGUACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 114429 0.91 0.154115
Target:  5'- cGGCAagUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 162608 0.91 0.158371
Target:  5'- uAGCAagUGAGUAUGUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 99775 0.9 0.186199
Target:  5'- cAGCGaaUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 13401 0.88 0.248459
Target:  5'- cGCAaaUGGGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGU--ACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 80768 0.86 0.296452
Target:  5'- cAGUgaGUGGGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG--UACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 42196 0.86 0.311427
Target:  5'- --aGUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 42251 0.85 0.334953
Target:  5'- aAGCuauauacaaAUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG---------UACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 55092 0.83 0.413075
Target:  5'- uGCuuuguguUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGu------ACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 1275 0.82 0.48106
Target:  5'- aGGCuauauauaaAUGAGUauAUAUAGCUCAGGUGUUAg -3'
miRNA:   3'- -UCG---------UACUCG--UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 25152 0.81 0.501475
Target:  5'- uAGCAagUGAGUAUAUAGCUUAGGgGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 29479 0.81 0.522262
Target:  5'- aAGCAuagUGAGUaaauAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU---ACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 33189 0.81 0.532781
Target:  5'- --aGUGAGUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 136265 0.81 0.543374
Target:  5'- uGGCAagUGAGUAUAUAGCUUAGGaGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 23474 0.8 0.564758
Target:  5'- aAGUGUGAaUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUACUcGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 54557 0.8 0.597216
Target:  5'- --aAUGAGCAuauaUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGU----AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 45298 0.8 0.597216
Target:  5'- uAGCAaGuaAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUaC--UCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 142373 0.79 0.608105
Target:  5'- uAGCAaauaAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUac--UCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 67023 0.79 0.619015
Target:  5'- uAGCGaaUGAGUAUAUAGCUUAGGaGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 149418 0.79 0.629936
Target:  5'- cAGCAaaUGAGUAUAUAGCUUAGGUaUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCAcAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.