miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 65789 1.08 0.014992
Target:  5'- cAGCAUGAGCAUAUAGCUCAGGUGUUAa -3'
miRNA:   3'- -UCGUACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 45113 0.75 0.825806
Target:  5'- uGCuUGuucGUAUAUAGCUUAGGUGUUAu -3'
miRNA:   3'- uCGuACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 169575 0.74 0.883671
Target:  5'- ----cGAGUGUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- ucguaCUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 81315 0.66 0.99894
Target:  5'- uAGCAagUGAGUAUAUAGCUUAaaaGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUccaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 1275 0.82 0.48106
Target:  5'- aGGCuauauauaaAUGAGUauAUAUAGCUCAGGUGUUAg -3'
miRNA:   3'- -UCG---------UACUCG--UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 25152 0.81 0.501475
Target:  5'- uAGCAagUGAGUAUAUAGCUUAGGgGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 67023 0.79 0.619015
Target:  5'- uAGCGaaUGAGUAUAUAGCUUAGGaGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 163418 0.78 0.67354
Target:  5'- -uCGUGAGUaaauAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 116660 0.77 0.737567
Target:  5'- gAGUAUaauaAGCAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAc---UCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 122795 0.75 0.816668
Target:  5'- uAGCGaccGAGUAUAUAGCUUAGGgGUUAa -3'
miRNA:   3'- -UCGUa--CUCGUAUAUCGAGUCCaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 104195 0.77 0.747937
Target:  5'- uAGCAuuUGuuUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU--ACucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 29603 0.77 0.737567
Target:  5'- uGCuUGuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 114429 0.91 0.154115
Target:  5'- cGGCAagUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 48596 0.76 0.768319
Target:  5'- gAGCAuagUGAGUgaauAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCGU---ACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 80768 0.86 0.296452
Target:  5'- cAGUgaGUGGGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG--UACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 134359 0.78 0.68437
Target:  5'- cAGCAaaUGAGUAUAUAGCUUAaGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUcCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 74804 0.76 0.797829
Target:  5'- --aAUGAGUguauAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 67734 0.74 0.867515
Target:  5'- uAGCAuaucgagUGAGUAUAUAGCUUAaGUGUUAa -3'
miRNA:   3'- -UCGU-------ACUCGUAUAUCGAGUcCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 42251 0.85 0.334953
Target:  5'- aAGCuauauacaaAUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG---------UACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 29479 0.81 0.522262
Target:  5'- aAGCAuagUGAGUaaauAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU---ACUCG----UAUAUCGAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.