miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 116841 0.7 0.977224
Target:  5'- ------uGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucguacuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 23688 0.68 0.99285
Target:  5'- gAGUAUGuaaguaAGUAUAUAGaUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAC------UCGUAUAUCgAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 69281 0.68 0.991738
Target:  5'- -----aAGCAUAUuaAGCUUAGGUGUUAa -3'
miRNA:   3'- ucguacUCGUAUA--UCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 63579 0.68 0.991738
Target:  5'- --aGUGAGUGUAUAGCUUAGaGaUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUC-C-ACAAU- -5'
28280 5' -48.8 NC_005902.1 + 97658 0.68 0.990494
Target:  5'- aAGUGUaauaAGUaaGUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAc---UCG--UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 47154 0.68 0.990494
Target:  5'- uGCuAUGcuuGCAUAUAGCUUAGGUaUUAa -3'
miRNA:   3'- uCG-UACu--CGUAUAUCGAGUCCAcAAU- -5'
28280 5' -48.8 NC_005902.1 + 3598 0.69 0.989107
Target:  5'- cAGCuAUGuuGUauGUAUAGCUUAGGUGUa- -3'
miRNA:   3'- -UCG-UACu-CG--UAUAUCGAGUCCACAau -5'
28280 5' -48.8 NC_005902.1 + 51038 0.69 0.989107
Target:  5'- cAGagaGUGAGUAUAUAGUUUAGaUGUUAa -3'
miRNA:   3'- -UCg--UACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 146805 0.69 0.989107
Target:  5'- aAGCA--AGUAUAUAGCUUAGaUGUUAg -3'
miRNA:   3'- -UCGUacUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 51639 0.68 0.99285
Target:  5'- cAGCAagUGAGUAUAUAGCUUAGa----- -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCcacaau -5'
28280 5' -48.8 NC_005902.1 + 50425 0.68 0.993839
Target:  5'- aAGCua---UAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGuacucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 136207 0.67 0.995488
Target:  5'- cGCaAUGAGUgaAUAUA-CUUAGGUGUUAa -3'
miRNA:   3'- uCG-UACUCG--UAUAUcGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 170799 0.66 0.998704
Target:  5'- aAGCAU----AUAUAGgUCAGGUGUUAc -3'
miRNA:   3'- -UCGUAcucgUAUAUCgAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 136787 0.66 0.998426
Target:  5'- cAGCAaauaAGUAUAUAaCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUac--UCGUAUAUcGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 85274 0.66 0.998426
Target:  5'- gAGCAUGuaAGUAUAUAGCcUAGaUGUUAa -3'
miRNA:   3'- -UCGUAC--UCGUAUAUCGaGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 37183 0.67 0.997717
Target:  5'- uAGCAaauaAGUAUAUAGCUUAGGUa--- -3'
miRNA:   3'- -UCGUac--UCGUAUAUCGAGUCCAcaau -5'
28280 5' -48.8 NC_005902.1 + 65975 0.67 0.996758
Target:  5'- uGC-UGuGUucauucauAUAUAGUUCAGGUGUUAa -3'
miRNA:   3'- uCGuACuCG--------UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 41192 0.67 0.995488
Target:  5'- aAGCuauauGUGAGUguAUAUAGCUUAGGUaUUAa -3'
miRNA:   3'- -UCG-----UACUCG--UAUAUCGAGUCCAcAAU- -5'
28280 5' -48.8 NC_005902.1 + 3289 0.67 0.995488
Target:  5'- --aGUGuaUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucgUACucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 7814 0.67 0.995488
Target:  5'- --aAUGAGUAUAUAaUUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUcGAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.