miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 28805 0.73 0.898019
Target:  5'- uGCucuuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuacu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 169575 0.74 0.883671
Target:  5'- ----cGAGUGUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- ucguaCUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 29603 0.77 0.737567
Target:  5'- uGCuUGuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 42251 0.85 0.334953
Target:  5'- aAGCuauauacaaAUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG---------UACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 162621 0.71 0.957779
Target:  5'- uGUAcuUGuuuGUAUAUAGCUUGGGUGUUAa -3'
miRNA:   3'- uCGU--ACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 147624 0.72 0.923532
Target:  5'- cAGUaaGUGAGUGUAUAGCUUAGaUGUUAa -3'
miRNA:   3'- -UCG--UACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 45113 0.75 0.825806
Target:  5'- uGCuUGuucGUAUAUAGCUUAGGUGUUAu -3'
miRNA:   3'- uCGuACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 80768 0.86 0.296452
Target:  5'- cAGUgaGUGGGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG--UACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 148270 0.73 0.917558
Target:  5'- aAGCAU-AGCA---AGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAcUCGUauaUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 114429 0.91 0.154115
Target:  5'- cGGCAagUGAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 67734 0.74 0.867515
Target:  5'- uAGCAuaucgagUGAGUAUAUAGCUUAaGUGUUAa -3'
miRNA:   3'- -UCGU-------ACUCGUAUAUCGAGUcCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 99643 0.73 0.898019
Target:  5'- uGCucacuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuacu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 48596 0.76 0.768319
Target:  5'- gAGCAuagUGAGUgaauAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCGU---ACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 116660 0.77 0.737567
Target:  5'- gAGUAUaauaAGCAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAc---UCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 67023 0.79 0.619015
Target:  5'- uAGCGaaUGAGUAUAUAGCUUAGGaGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 1275 0.82 0.48106
Target:  5'- aGGCuauauauaaAUGAGUauAUAUAGCUCAGGUGUUAg -3'
miRNA:   3'- -UCG---------UACUCG--UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 28957 0.7 0.974559
Target:  5'- uGCuau-GCuGUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuacuCG-UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 52362 0.71 0.96162
Target:  5'- -uUAUuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUAcuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 6226 0.72 0.944707
Target:  5'- --aAUGAGUAUAUAGCUUAGuUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 50491 0.72 0.929233
Target:  5'- gAGUGUGuGUAUcUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCGUACuCGUAuAUCGAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.