miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 169733 0.79 0.629936
Target:  5'- uGUAacaccUGAGaUAUAUAGCUCAGGUGUUAa -3'
miRNA:   3'- uCGU-----ACUC-GUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 154801 0.79 0.651774
Target:  5'- uAGCAagUGAGUAUAUAGCUUAGGUaaaggGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCA-----CAAU- -5'
28280 5' -48.8 NC_005902.1 + 47453 0.79 0.651774
Target:  5'- aGGaGUGuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCgUACuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 50331 0.79 0.651774
Target:  5'- aAGCAcaguaAGUAUGUAGCUUAGGUGUUAg -3'
miRNA:   3'- -UCGUac---UCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 162807 0.78 0.662671
Target:  5'- cAGCAagUGAGUAUAUAGCUUAGGUa--- -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCAcaau -5'
28280 5' -48.8 NC_005902.1 + 129001 0.78 0.662671
Target:  5'- uAGCuGUGAGUguaaacaaguAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG-UACUCG----------UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 163418 0.78 0.67354
Target:  5'- -uCGUGAGUaaauAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 134359 0.78 0.68437
Target:  5'- cAGCAaaUGAGUAUAUAGCUUAaGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUcCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 146648 0.78 0.68437
Target:  5'- --aGUGAGCAuagugaauUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGU--------AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 80954 0.78 0.695152
Target:  5'- uGCAuuUGuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGU--ACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 184808 0.78 0.695152
Target:  5'- uAGCAagUGAGUAUAUAGCUUAaGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUcCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 143238 0.78 0.705873
Target:  5'- uAGCAaaUGAGUAUAUAGCUUAGaUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 167371 0.78 0.705873
Target:  5'- cGCuuaAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuacUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 50281 0.77 0.716523
Target:  5'- aAGCuauauacaaGUGAGCAUAgcaaaugaacaUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG---------UACUCGUAU-----------AUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 29603 0.77 0.737567
Target:  5'- uGCuUGuuuGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 116660 0.77 0.737567
Target:  5'- gAGUAUaauaAGCAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCGUAc---UCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 142022 0.77 0.747937
Target:  5'- uGCGU--GUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGUAcuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 104195 0.77 0.747937
Target:  5'- uAGCAuuUGuuUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU--ACucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 181039 0.77 0.758191
Target:  5'- --aGUGAGUAUAUcGCUUAGGUGUUAg -3'
miRNA:   3'- ucgUACUCGUAUAuCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 158069 0.76 0.768319
Target:  5'- uAGCA--AGCAaauaUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUacUCGU----AUAUCGAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.