miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 184808 0.78 0.695152
Target:  5'- uAGCAagUGAGUAUAUAGCUUAaGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUcCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 181039 0.77 0.758191
Target:  5'- --aGUGAGUAUAUcGCUUAGGUGUUAg -3'
miRNA:   3'- ucgUACUCGUAUAuCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 174807 0.73 0.911314
Target:  5'- -uCAUucGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUAcuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 170799 0.66 0.998704
Target:  5'- aAGCAU----AUAUAGgUCAGGUGUUAc -3'
miRNA:   3'- -UCGUAcucgUAUAUCgAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 170762 0.71 0.949327
Target:  5'- aAGCuauauacauGUGAGUguauAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- -UCG---------UACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 169733 0.79 0.629936
Target:  5'- uGUAacaccUGAGaUAUAUAGCUCAGGUGUUAa -3'
miRNA:   3'- uCGU-----ACUC-GUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 169575 0.74 0.883671
Target:  5'- ----cGAGUGUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- ucguaCUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 169523 0.69 0.985864
Target:  5'- ---cUGAGCuAUAUAuCUCAGGUGUUAc -3'
miRNA:   3'- ucguACUCG-UAUAUcGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 167371 0.78 0.705873
Target:  5'- cGCuuaAGUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGuacUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 167182 0.72 0.939819
Target:  5'- aAGC----GUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGuacuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 163418 0.78 0.67354
Target:  5'- -uCGUGAGUaaauAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucGUACUCG----UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 162807 0.78 0.662671
Target:  5'- cAGCAagUGAGUAUAUAGCUUAGGUa--- -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCAcaau -5'
28280 5' -48.8 NC_005902.1 + 162621 0.71 0.957779
Target:  5'- uGUAcuUGuuuGUAUAUAGCUUGGGUGUUAa -3'
miRNA:   3'- uCGU--ACu--CGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 162608 0.91 0.158371
Target:  5'- uAGCAagUGAGUAUGUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 162431 0.73 0.917558
Target:  5'- ---uUGuGUGUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucguACuCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 158069 0.76 0.768319
Target:  5'- uAGCA--AGCAaauaUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUacUCGU----AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 157010 0.74 0.876114
Target:  5'- aAGUAUaacaaauaAGUAUAUAGCUUAGGUGUUAg -3'
miRNA:   3'- -UCGUAc-------UCGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 156423 0.67 0.995488
Target:  5'- cAGUgaAUGAGUAUAUAGCUUAaaUGUUAa -3'
miRNA:   3'- -UCG--UACUCGUAUAUCGAGUccACAAU- -5'
28280 5' -48.8 NC_005902.1 + 155134 0.74 0.883671
Target:  5'- cAGCGaaUGAGUAUAUAGCUUGGaUGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 154801 0.79 0.651774
Target:  5'- uAGCAagUGAGUAUAUAGCUUAGGUaaaggGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUCCA-----CAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.