miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 167735 0.71 0.999921
Target:  5'- gCUUUAACUCCUAAgGCaUUAUuaaUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 67674 0.71 0.999921
Target:  5'- cCUUUAACUUCUAAgGCaUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 106000 0.71 0.999914
Target:  5'- uCUUUAACUCCUaaguuguucucaauGAUgcuuuAUGUCAUUGGUGa -3'
miRNA:   3'- -GGAAUUGAGGA--------------UUG-----UGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 67074 0.72 0.999895
Target:  5'- cCCccAACUCCaAACAUGUUAcUGAUGa -3'
miRNA:   3'- -GGaaUUGAGGaUUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 8529 0.72 0.999895
Target:  5'- -aUUAAUUCCUAAaGCuUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 125951 0.72 0.999895
Target:  5'- uCUUUAACUUCUAAgGCaUUGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 15804 0.72 0.999895
Target:  5'- cCUUUAACUCCUAagGCAUuGUUAaUGAUGc -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUG-CAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 169669 0.72 0.99977
Target:  5'- uUUUAACUCUUAAgGCGUCAUcaaUGAc- -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUA---ACUac -5'
28281 3' -43.3 NC_005902.1 + 181205 0.72 0.999705
Target:  5'- cCUUUAACUCCUAAaGCGUUGUcaaUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUA---ACUAc -5'
28281 3' -43.3 NC_005902.1 + 99909 0.72 0.999705
Target:  5'- cCUUUAAUUCCUAAgGCGUCAUc---- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAacuac -5'
28281 3' -43.3 NC_005902.1 + 50641 0.73 0.999626
Target:  5'- --aUAACUCCaAAUAUGUCAUcGAUGa -3'
miRNA:   3'- ggaAUUGAGGaUUGUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 162467 0.73 0.999626
Target:  5'- uUUUAAUUCCUAAgGUGUUGUUGAUGg -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 82627 0.73 0.999626
Target:  5'- uUUUAACUCCUAAgAUaUUAUUGAUGu -3'
miRNA:   3'- gGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 90720 0.73 0.999528
Target:  5'- cCUUUAACUCC--ACAuCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 161949 0.73 0.999494
Target:  5'- aCUUUAACUCCUAaggcaucguuaauaACACauaguaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 55119 0.74 0.999089
Target:  5'- cCUUUAAUUCC--GCAuUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 49984 0.74 0.99903
Target:  5'- cCUUUAACUCCUAAggcauCAUcaauaaugcuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUU-----GUG--------------CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 165782 0.74 0.998632
Target:  5'- --aUAACUCCUAAaACaUCAUUGAUGa -3'
miRNA:   3'- ggaAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 170136 0.74 0.998632
Target:  5'- cCUUUAACcCCaAACACGUCGUcGGUGa -3'
miRNA:   3'- -GGAAUUGaGGaUUGUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 58404 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.