Results 41 - 60 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28281 | 3' | -43.3 | NC_005902.1 | + | 163813 | 0.69 | 0.999996 |
Target: 5'- cUCUUAACUCCUAAagUGUCAUUa--- -3' miRNA: 3'- -GGAAUUGAGGAUUguGCAGUAAcuac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 8344 | 0.69 | 0.999994 |
Target: 5'- cUCUUAACUCCUAaaACAuUGUCGaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAU--UGU-GCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 101974 | 0.69 | 0.999994 |
Target: 5'- ----uACUCCUAAauCGUCAUUGAUa -3' miRNA: 3'- ggaauUGAGGAUUguGCAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 146654 | 0.69 | 0.999994 |
Target: 5'- cCUUUAACUCUacauugucguuaaUAACAUGaagcaUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGG-------------AUUGUGC-----AGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 112529 | 0.69 | 0.999994 |
Target: 5'- cCUUUAACUCU--ACACuGUUAUUGAUa -3' miRNA: 3'- -GGAAUUGAGGauUGUG-CAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 37567 | 0.69 | 0.999994 |
Target: 5'- uUUUAACUCCUaaggcaucucgauGACGCcuuguGUUAUUGAUGa -3' miRNA: 3'- gGAAUUGAGGA-------------UUGUG-----CAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 106321 | 0.7 | 0.999991 |
Target: 5'- uCUUUAACUCCUAAgGCaUCAUUaAUGc -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAAcUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 157919 | 0.7 | 0.999991 |
Target: 5'- cCUUUAACUCCaugugucaucgaUGAUGCuuuguGUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGG------------AUUGUG-----CAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 103936 | 0.7 | 0.999991 |
Target: 5'- cCUUUAAUUCUUAAaGCaUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 166076 | 0.7 | 0.999991 |
Target: 5'- cCUUUAACUUCUAAgAUGUCAUUa--- -3' miRNA: 3'- -GGAAUUGAGGAUUgUGCAGUAAcuac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 116760 | 0.7 | 0.999983 |
Target: 5'- cCCUUuACUCCUAAaACaUCAUUGAc- -3' miRNA: 3'- -GGAAuUGAGGAUUgUGcAGUAACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 15931 | 0.7 | 0.99998 |
Target: 5'- cCUUUAAUUCCUGggguaucauuaauaACACucuacauGUCGUUGAUGa -3' miRNA: 3'- -GGAAUUGAGGAU--------------UGUG-------CAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 90491 | 0.7 | 0.999976 |
Target: 5'- cCUUUAACUCUUAAgGCaUCAUcGAUGa -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAaCUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 29028 | 0.71 | 0.999967 |
Target: 5'- uCUUUGACUCUaAAUAUGUUAcUGAUGa -3' miRNA: 3'- -GGAAUUGAGGaUUGUGCAGUaACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 78733 | 0.71 | 0.999956 |
Target: 5'- cCCUUAACUCCUAAa--G-CGUUGAc- -3' miRNA: 3'- -GGAAUUGAGGAUUgugCaGUAACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 167553 | 0.71 | 0.999956 |
Target: 5'- cCUUUAAUUCCUAAaGCaUCAUUGAUa -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 68364 | 0.71 | 0.99994 |
Target: 5'- uCUUUAAUUUCUAGgACaUCAUUGAUGu -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 27848 | 0.71 | 0.999921 |
Target: 5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 167735 | 0.71 | 0.999921 |
Target: 5'- gCUUUAACUCCUAAgGCaUUAUuaaUGAUGa -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 67674 | 0.71 | 0.999921 |
Target: 5'- cCUUUAACUUCUAAgGCaUCAUUGAc- -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUAACUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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