miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 67074 0.72 0.999895
Target:  5'- cCCccAACUCCaAACAUGUUAcUGAUGa -3'
miRNA:   3'- -GGaaUUGAGGaUUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 67424 0.8 0.959954
Target:  5'- uCUUUAACUCCUAagGCAUuGUUAUUGAUGc -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUG-CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 67674 0.71 0.999921
Target:  5'- cCUUUAACUUCUAAgGCaUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 67821 0.68 0.999999
Target:  5'- aCCUuuUAACUCCUAaaGCAuUGUCAaUGAc- -3'
miRNA:   3'- -GGA--AUUGAGGAU--UGU-GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 68364 0.71 0.99994
Target:  5'- uCUUUAAUUUCUAGgACaUCAUUGAUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 71681 1.13 0.040072
Target:  5'- uCCUUAACUCCUAACACGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUGUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 71929 0.77 0.988562
Target:  5'- cCUUUAAUUCC--ACAuCGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 75079 0.93 0.414387
Target:  5'- cCUUUAACUCCUAAUGCGUUGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUGUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 75753 0.67 1
Target:  5'- cUCUUAACUCCUAaaGCACcaUCAaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUGc-AGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 76000 0.69 0.999999
Target:  5'- cCUUUAAUUCCacaugucauUAACAaugcguugUGUCAUUGAUGg -3'
miRNA:   3'- -GGAAUUGAGG---------AUUGU--------GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 78733 0.71 0.999956
Target:  5'- cCCUUAACUCCUAAa--G-CGUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgugCaGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 81857 0.94 0.405083
Target:  5'- uCUUUAACUCCUAAgGCGUUAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 81997 0.68 1
Target:  5'- cCUUUAAaUCCUAAgGUGUUAUUGGUGa -3'
miRNA:   3'- -GGAAUUgAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 82108 0.67 1
Target:  5'- aCCUuuUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 82627 0.73 0.999626
Target:  5'- uUUUAACUCCUAAgAUaUUAUUGAUGu -3'
miRNA:   3'- gGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 83800 0.67 1
Target:  5'- -gUUAACUCCUAAgGCaUUAaUGAUGu -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 90491 0.7 0.999976
Target:  5'- cCUUUAACUCUUAAgGCaUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 90720 0.73 0.999528
Target:  5'- cCUUUAACUCC--ACAuCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 91069 0.87 0.698683
Target:  5'- cCCUUAACUCCUAAgGCaUUAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 93540 0.66 1
Target:  5'- cCCUUAACUUCacaucguuguuaaUGACAUaaagcaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGG-------------AUUGUGc-----AGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.