miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 82627 0.73 0.999626
Target:  5'- uUUUAACUCCUAAgAUaUUAUUGAUGu -3'
miRNA:   3'- gGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 162467 0.73 0.999626
Target:  5'- uUUUAAUUCCUAAgGUGUUGUUGAUGg -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 99909 0.72 0.999705
Target:  5'- cCUUUAAUUCCUAAgGCGUCAUc---- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAacuac -5'
28281 3' -43.3 NC_005902.1 + 181205 0.72 0.999705
Target:  5'- cCUUUAACUCCUAAaGCGUUGUcaaUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUA---ACUAc -5'
28281 3' -43.3 NC_005902.1 + 169669 0.72 0.99977
Target:  5'- uUUUAACUCUUAAgGCGUCAUcaaUGAc- -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUA---ACUac -5'
28281 3' -43.3 NC_005902.1 + 67074 0.72 0.999895
Target:  5'- cCCccAACUCCaAACAUGUUAcUGAUGa -3'
miRNA:   3'- -GGaaUUGAGGaUUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 8529 0.72 0.999895
Target:  5'- -aUUAAUUCCUAAaGCuUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 125951 0.72 0.999895
Target:  5'- uCUUUAACUUCUAAgGCaUUGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 15804 0.72 0.999895
Target:  5'- cCUUUAACUCCUAagGCAUuGUUAaUGAUGc -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUG-CAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 106000 0.71 0.999914
Target:  5'- uCUUUAACUCCUaaguuguucucaauGAUgcuuuAUGUCAUUGGUGa -3'
miRNA:   3'- -GGAAUUGAGGA--------------UUG-----UGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 27731 0.71 0.999921
Target:  5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 66957 0.71 0.999921
Target:  5'- aUUUAGCUCU--ACACaUCGUUGAUGa -3'
miRNA:   3'- gGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 167735 0.71 0.999921
Target:  5'- gCUUUAACUCCUAAgGCaUUAUuaaUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 27848 0.71 0.999921
Target:  5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 67674 0.71 0.999921
Target:  5'- cCUUUAACUUCUAAgGCaUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 68364 0.71 0.99994
Target:  5'- uCUUUAAUUUCUAGgACaUCAUUGAUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 78733 0.71 0.999956
Target:  5'- cCCUUAACUCCUAAa--G-CGUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgugCaGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 167553 0.71 0.999956
Target:  5'- cCUUUAAUUCCUAAaGCaUCAUUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 29028 0.71 0.999967
Target:  5'- uCUUUGACUCUaAAUAUGUUAcUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGaUUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 90491 0.7 0.999976
Target:  5'- cCUUUAACUCUUAAgGCaUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAaCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.