miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 37567 0.69 0.999994
Target:  5'- uUUUAACUCCUaaggcaucucgauGACGCcuuguGUUAUUGAUGa -3'
miRNA:   3'- gGAAUUGAGGA-------------UUGUG-----CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 112529 0.69 0.999994
Target:  5'- cCUUUAACUCU--ACACuGUUAUUGAUa -3'
miRNA:   3'- -GGAAUUGAGGauUGUG-CAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 20302 0.69 0.999996
Target:  5'- ----uACUCCUAACucAUGUCAUcGAUGa -3'
miRNA:   3'- ggaauUGAGGAUUG--UGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 163813 0.69 0.999996
Target:  5'- cUCUUAACUCCUAAagUGUCAUUa--- -3'
miRNA:   3'- -GGAAUUGAGGAUUguGCAGUAAcuac -5'
28281 3' -43.3 NC_005902.1 + 156711 0.69 0.999996
Target:  5'- cCUUUAACUCUUAAgGCaUCAUcaaUGAUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 76000 0.69 0.999999
Target:  5'- cCUUUAAUUCCacaugucauUAACAaugcguugUGUCAUUGAUGg -3'
miRNA:   3'- -GGAAUUGAGG---------AUUGU--------GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 15931 0.7 0.99998
Target:  5'- cCUUUAAUUCCUGggguaucauuaauaACACucuacauGUCGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUG-------CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 103936 0.7 0.999991
Target:  5'- cCUUUAAUUCUUAAaGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 166076 0.7 0.999991
Target:  5'- cCUUUAACUUCUAAgAUGUCAUUa--- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAAcuac -5'
28281 3' -43.3 NC_005902.1 + 116760 0.7 0.999983
Target:  5'- cCCUUuACUCCUAAaACaUCAUUGAc- -3'
miRNA:   3'- -GGAAuUGAGGAUUgUGcAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 106321 0.7 0.999991
Target:  5'- uCUUUAACUCCUAAgGCaUCAUUaAUGc -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAAcUAC- -5'
28281 3' -43.3 NC_005902.1 + 90491 0.7 0.999976
Target:  5'- cCUUUAACUCUUAAgGCaUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 157919 0.7 0.999991
Target:  5'- cCUUUAACUCCaugugucaucgaUGAUGCuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGG------------AUUGUG-----CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 106000 0.71 0.999914
Target:  5'- uCUUUAACUCCUaaguuguucucaauGAUgcuuuAUGUCAUUGGUGa -3'
miRNA:   3'- -GGAAUUGAGGA--------------UUG-----UGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 167553 0.71 0.999956
Target:  5'- cCUUUAAUUCCUAAaGCaUCAUUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 167735 0.71 0.999921
Target:  5'- gCUUUAACUCCUAAgGCaUUAUuaaUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 27848 0.71 0.999921
Target:  5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 67674 0.71 0.999921
Target:  5'- cCUUUAACUUCUAAgGCaUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 27731 0.71 0.999921
Target:  5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 29028 0.71 0.999967
Target:  5'- uCUUUGACUCUaAAUAUGUUAcUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGaUUGUGCAGUaACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.