miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 139815 0.68 0.999999
Target:  5'- aCCUuuUAACUCCauguugucaaUGACGCcuugcaUCAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGG----------AUUGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 78733 0.71 0.999956
Target:  5'- cCCUUAACUCCUAAa--G-CGUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgugCaGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 20222 0.76 0.992481
Target:  5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 67821 0.68 0.999999
Target:  5'- aCCUuuUAACUCCUAaaGCAuUGUCAaUGAc- -3'
miRNA:   3'- -GGA--AUUGAGGAU--UGU-GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 149853 0.77 0.991316
Target:  5'- uCCUUaAACUCCUAAaACaUCGUUGAUGa -3'
miRNA:   3'- -GGAA-UUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 5314 0.66 1
Target:  5'- uUUUAACUUCUAAgGUGUCGUcaaUGAUGc -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 20057 0.75 0.995961
Target:  5'- aUUUAACUCUUaaGACAUGUCAaUGAUGc -3'
miRNA:   3'- gGAAUUGAGGA--UUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 139875 0.67 1
Target:  5'- -gUUAACUCUUuaauguUAUGUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAuu----GUGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 83800 0.67 1
Target:  5'- -gUUAACUCCUAAgGCaUUAaUGAUGu -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 75753 0.67 1
Target:  5'- cUCUUAACUCCUAaaGCACcaUCAaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAU--UGUGc-AGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 114742 0.67 1
Target:  5'- cCCcUAACUCCcAAgGCaUCAUUGAUa -3'
miRNA:   3'- -GGaAUUGAGGaUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 3130 0.68 1
Target:  5'- -aUUAACUCCguAUACGUCAcUGAc- -3'
miRNA:   3'- ggAAUUGAGGauUGUGCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 81997 0.68 1
Target:  5'- cCUUUAAaUCCUAAgGUGUUAUUGGUGa -3'
miRNA:   3'- -GGAAUUgAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 173180 0.69 0.999996
Target:  5'- cCCUUAACUCCUAaguuauauACACGUUu------ -3'
miRNA:   3'- -GGAAUUGAGGAU--------UGUGCAGuaacuac -5'
28281 3' -43.3 NC_005902.1 + 8344 0.69 0.999994
Target:  5'- cUCUUAACUCCUAaaACAuUGUCGaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAU--UGU-GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 103936 0.7 0.999991
Target:  5'- cCUUUAAUUCUUAAaGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 90491 0.7 0.999976
Target:  5'- cCUUUAACUCUUAAgGCaUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 106000 0.71 0.999914
Target:  5'- uCUUUAACUCCUaaguuguucucaauGAUgcuuuAUGUCAUUGGUGa -3'
miRNA:   3'- -GGAAUUGAGGA--------------UUG-----UGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 162467 0.73 0.999626
Target:  5'- uUUUAAUUCCUAAgGUGUUGUUGAUGg -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58603 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.