miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 162467 0.73 0.999626
Target:  5'- uUUUAAUUCCUAAgGUGUUGUUGAUGg -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 165782 0.74 0.998632
Target:  5'- --aUAACUCCUAAaACaUCAUUGAUGa -3'
miRNA:   3'- ggaAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58157 0.79 0.973391
Target:  5'- uCUUUAACUCUUAAgACGUUAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 91069 0.87 0.698683
Target:  5'- cCCUUAACUCCUAAgGCaUUAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 166076 0.7 0.999991
Target:  5'- cCUUUAACUUCUAAgAUGUCAUUa--- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAAcuac -5'
28281 3' -43.3 NC_005902.1 + 27731 0.71 0.999921
Target:  5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 161775 0.75 0.996583
Target:  5'- cCUUUAACaCCUAAgGUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGaGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 169074 0.89 0.622073
Target:  5'- uUCUUGAUUCUUAAgGCGUCGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 66957 0.71 0.999921
Target:  5'- aUUUAGCUCU--ACACaUCGUUGAUGa -3'
miRNA:   3'- gGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 81857 0.94 0.405083
Target:  5'- uCUUUAACUCCUAAgGCGUUAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58603 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 169669 0.72 0.99977
Target:  5'- uUUUAACUCUUAAgGCGUCAUcaaUGAc- -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUA---ACUac -5'
28281 3' -43.3 NC_005902.1 + 95873 0.76 0.994174
Target:  5'- cCCUcUAACUCCUAaggcauuaucaacaACACuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGA-AUUGAGGAU--------------UGUG-----CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 130812 0.78 0.981067
Target:  5'- cCUUUAACUUCUAAgGCGUCAUcGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAaCUAc -5'
28281 3' -43.3 NC_005902.1 + 42149 0.8 0.947222
Target:  5'- -gUUAACUCCaAACAUGUCAUUGAc- -3'
miRNA:   3'- ggAAUUGAGGaUUGUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 16806 0.86 0.751678
Target:  5'- cCUUUAACUCCUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 101974 0.69 0.999994
Target:  5'- ----uACUCCUAAauCGUCAUUGAUa -3'
miRNA:   3'- ggaauUGAGGAUUguGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 157919 0.7 0.999991
Target:  5'- cCUUUAACUCCaugugucaucgaUGAUGCuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGG------------AUUGUG-----CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 15931 0.7 0.99998
Target:  5'- cCUUUAAUUCCUGggguaucauuaauaACACucuacauGUCGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUG-------CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 78733 0.71 0.999956
Target:  5'- cCCUUAACUCCUAAa--G-CGUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgugCaGUAACUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.