Results 21 - 40 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28281 | 3' | -43.3 | NC_005902.1 | + | 28879 | 0.68 | 0.999999 |
Target: 5'- -aUUAAUUCCUAgggcaucaGCACuGUCAgUGAUGa -3' miRNA: 3'- ggAAUUGAGGAU--------UGUG-CAGUaACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 139815 | 0.68 | 0.999999 |
Target: 5'- aCCUuuUAACUCCauguugucaaUGACGCcuugcaUCAUUGAUGa -3' miRNA: 3'- -GGA--AUUGAGG----------AUUGUGc-----AGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 97110 | 0.68 | 1 |
Target: 5'- uUUUAACUCUgAACAUGUUGUcaaUGAUGu -3' miRNA: 3'- gGAAUUGAGGaUUGUGCAGUA---ACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 144335 | 0.68 | 0.999999 |
Target: 5'- -aUUAACUCCUAAgGCaUCAaUGAUa -3' miRNA: 3'- ggAAUUGAGGAUUgUGcAGUaACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 162331 | 0.68 | 1 |
Target: 5'- uUUUAAUUUUaAACACGUCAUuaaUGAUGu -3' miRNA: 3'- gGAAUUGAGGaUUGUGCAGUA---ACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 174933 | 0.68 | 1 |
Target: 5'- -aUUAACUCCUAAaAUaUCAUUGAUa -3' miRNA: 3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 81997 | 0.68 | 1 |
Target: 5'- cCUUUAAaUCCUAAgGUGUUAUUGGUGa -3' miRNA: 3'- -GGAAUUgAGGAUUgUGCAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 11426 | 0.68 | 0.999999 |
Target: 5'- uCCUUAACUCUUAAgGCaUCAUcaaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAUUgUGcAGUA---ACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 3130 | 0.68 | 1 |
Target: 5'- -aUUAACUCCguAUACGUCAcUGAc- -3' miRNA: 3'- ggAAUUGAGGauUGUGCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 67821 | 0.68 | 0.999999 |
Target: 5'- aCCUuuUAACUCCUAaaGCAuUGUCAaUGAc- -3' miRNA: 3'- -GGA--AUUGAGGAU--UGU-GCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 37320 | 0.68 | 1 |
Target: 5'- cCUUUAACUCCauguugucaucaaUAACacaagGCGUCAUcGAUGa -3' miRNA: 3'- -GGAAUUGAGG-------------AUUG-----UGCAGUAaCUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 99188 | 0.68 | 1 |
Target: 5'- cCCUUAACUUCUAagGCAuUGUUAaUGAUa -3' miRNA: 3'- -GGAAUUGAGGAU--UGU-GCAGUaACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 101974 | 0.69 | 0.999994 |
Target: 5'- ----uACUCCUAAauCGUCAUUGAUa -3' miRNA: 3'- ggaauUGAGGAUUguGCAGUAACUAc -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 8344 | 0.69 | 0.999994 |
Target: 5'- cUCUUAACUCCUAaaACAuUGUCGaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAU--UGU-GCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 146654 | 0.69 | 0.999994 |
Target: 5'- cCUUUAACUCUacauugucguuaaUAACAUGaagcaUCAUUGAUGa -3' miRNA: 3'- -GGAAUUGAGG-------------AUUGUGC-----AGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 33387 | 0.69 | 0.999996 |
Target: 5'- uCUUUAACUCCUAAaguauCGUCGaUGAc- -3' miRNA: 3'- -GGAAUUGAGGAUUgu---GCAGUaACUac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 76000 | 0.69 | 0.999999 |
Target: 5'- cCUUUAAUUCCacaugucauUAACAaugcguugUGUCAUUGAUGg -3' miRNA: 3'- -GGAAUUGAGG---------AUUGU--------GCAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 37567 | 0.69 | 0.999994 |
Target: 5'- uUUUAACUCCUaaggcaucucgauGACGCcuuguGUUAUUGAUGa -3' miRNA: 3'- gGAAUUGAGGA-------------UUGUG-----CAGUAACUAC- -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 163813 | 0.69 | 0.999996 |
Target: 5'- cUCUUAACUCCUAAagUGUCAUUa--- -3' miRNA: 3'- -GGAAUUGAGGAUUguGCAGUAAcuac -5' |
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28281 | 3' | -43.3 | NC_005902.1 | + | 20302 | 0.69 | 0.999996 |
Target: 5'- ----uACUCCUAACucAUGUCAUcGAUGa -3' miRNA: 3'- ggaauUGAGGAUUG--UGCAGUAaCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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