miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 27848 0.71 0.999921
Target:  5'- uCUUUAACUCCUAAgGCaUCAUcgccGAUGg -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 28879 0.68 0.999999
Target:  5'- -aUUAAUUCCUAgggcaucaGCACuGUCAgUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAU--------UGUG-CAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 29028 0.71 0.999967
Target:  5'- uCUUUGACUCUaAAUAUGUUAcUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGaUUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 33259 0.69 0.999996
Target:  5'- uCUUUAACUCCUAAaguauCGUCGaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgu---GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 33387 0.69 0.999996
Target:  5'- uCUUUAACUCCUAAaguauCGUCGaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgu---GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 37320 0.68 1
Target:  5'- cCUUUAACUCCauguugucaucaaUAACacaagGCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGG-------------AUUG-----UGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 37567 0.69 0.999994
Target:  5'- uUUUAACUCCUaaggcaucucgauGACGCcuuguGUUAUUGAUGa -3'
miRNA:   3'- gGAAUUGAGGA-------------UUGUG-----CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 39159 0.8 0.959954
Target:  5'- cCCUUAACUCCUAAaaaGUUGUUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgugCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 42149 0.8 0.947222
Target:  5'- -gUUAACUCCaAACAUGUCAUUGAc- -3'
miRNA:   3'- ggAAUUGAGGaUUGUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 48416 0.9 0.578261
Target:  5'- cCUUUAGCUCCUAAgGCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 49984 0.74 0.99903
Target:  5'- cCUUUAACUCCUAAggcauCAUcaauaaugcuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUU-----GUG--------------CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 50416 0.67 1
Target:  5'- -gUUAAUUCCUAAgGCaUCAUcGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 50641 0.73 0.999626
Target:  5'- --aUAACUCCaAAUAUGUCAUcGAUGa -3'
miRNA:   3'- ggaAUUGAGGaUUGUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 54680 0.67 1
Target:  5'- --aUAACUCCUAAUACagGUgAUUGGUu -3'
miRNA:   3'- ggaAUUGAGGAUUGUG--CAgUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 55119 0.74 0.999089
Target:  5'- cCUUUAAUUCC--GCAuUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58157 0.79 0.973391
Target:  5'- uCUUUAACUCUUAAgACGUUAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 58404 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58603 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58849 0.84 0.847182
Target:  5'- uCUUUAACUCUUAAgACGUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 66957 0.71 0.999921
Target:  5'- aUUUAGCUCU--ACACaUCGUUGAUGa -3'
miRNA:   3'- gGAAUUGAGGauUGUGcAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.