miRNA display CGI


Results 21 - 40 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 149385 0.76 0.995249
Target:  5'- -aUUAACUCCUAAaAUGUCAUcGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 146654 0.69 0.999994
Target:  5'- cCUUUAACUCUacauugucguuaaUAACAUGaagcaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGG-------------AUUGUGC-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 144335 0.68 0.999999
Target:  5'- -aUUAACUCCUAAgGCaUCAaUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUaACUAc -5'
28281 3' -43.3 NC_005902.1 + 143775 0.82 0.914442
Target:  5'- -gUUAACUCCUAAgAUGUCAUUGAc- -3'
miRNA:   3'- ggAAUUGAGGAUUgUGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 140066 0.67 1
Target:  5'- -gUUAACcCCUAACucaugGCGUCAUcaaUGAUGc -3'
miRNA:   3'- ggAAUUGaGGAUUG-----UGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 139875 0.67 1
Target:  5'- -gUUAACUCUUuaauguUAUGUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAuu----GUGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 139815 0.68 0.999999
Target:  5'- aCCUuuUAACUCCauguugucaaUGACGCcuugcaUCAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGG----------AUUGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 137845 0.75 0.997592
Target:  5'- cCUUUAACUCCUAAaguaUCAUUGAUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgugcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 137790 0.76 0.994438
Target:  5'- aCCUuuUAGCUCCUAugGCaUUAUUGAUa -3'
miRNA:   3'- -GGA--AUUGAGGAUugUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 136731 0.66 1
Target:  5'- uCUUUAACUCCaugu-UGUCAUUGAc- -3'
miRNA:   3'- -GGAAUUGAGGauuguGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 134346 0.66 1
Target:  5'- --cUAAUUCCUAAgAUGUCAUcaacGAUGc -3'
miRNA:   3'- ggaAUUGAGGAUUgUGCAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 134275 0.66 1
Target:  5'- uCUUUAACUCCUAAgGCaUUAUuaacaaUGGUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA------ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 130812 0.78 0.981067
Target:  5'- cCUUUAACUUCUAAgGCGUCAUcGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAaCUAc -5'
28281 3' -43.3 NC_005902.1 + 125951 0.72 0.999895
Target:  5'- uCUUUAACUUCUAAgGCaUUGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 123082 0.66 1
Target:  5'- cCUUUAAUUCCUAaggcaucaucaACaaugcaaaACGUCAUUGAa- -3'
miRNA:   3'- -GGAAUUGAGGAU-----------UG--------UGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 118965 0.69 0.999996
Target:  5'- aCCUuuUAACUCCUAAaGCaUUAUUGAUa -3'
miRNA:   3'- -GGA--AUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 116760 0.7 0.999983
Target:  5'- cCCUUuACUCCUAAaACaUCAUUGAc- -3'
miRNA:   3'- -GGAAuUGAGGAUUgUGcAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 114990 0.66 1
Target:  5'- cCUUUAACUCU--ACAuCGUCAccGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUaaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 114742 0.67 1
Target:  5'- cCCcUAACUCCcAAgGCaUCAUUGAUa -3'
miRNA:   3'- -GGaAUUGAGGaUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 112529 0.69 0.999994
Target:  5'- cCUUUAACUCU--ACACuGUUAUUGAUa -3'
miRNA:   3'- -GGAAUUGAGGauUGUG-CAGUAACUAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.