miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 181205 0.72 0.999705
Target:  5'- cCUUUAACUCCUAAaGCGUUGUcaaUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUA---ACUAc -5'
28281 3' -43.3 NC_005902.1 + 180753 0.67 1
Target:  5'- cCCUUAAUUCCUAagguguuaucaacaAUGCuucauaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 174933 0.68 1
Target:  5'- -aUUAACUCCUAAaAUaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 173180 0.69 0.999996
Target:  5'- cCCUUAACUCCUAaguuauauACACGUUu------ -3'
miRNA:   3'- -GGAAUUGAGGAU--------UGUGCAGuaacuac -5'
28281 3' -43.3 NC_005902.1 + 170136 0.74 0.998632
Target:  5'- cCUUUAACcCCaAACACGUCGUcGGUGa -3'
miRNA:   3'- -GGAAUUGaGGaUUGUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 169669 0.72 0.99977
Target:  5'- uUUUAACUCUUAAgGCGUCAUcaaUGAc- -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUA---ACUac -5'
28281 3' -43.3 NC_005902.1 + 169074 0.89 0.622073
Target:  5'- uUCUUGAUUCUUAAgGCGUCGUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 167735 0.71 0.999921
Target:  5'- gCUUUAACUCCUAAgGCaUUAUuaaUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 167553 0.71 0.999956
Target:  5'- cCUUUAAUUCCUAAaGCaUCAUUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 166076 0.7 0.999991
Target:  5'- cCUUUAACUUCUAAgAUGUCAUUa--- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGCAGUAAcuac -5'
28281 3' -43.3 NC_005902.1 + 165782 0.74 0.998632
Target:  5'- --aUAACUCCUAAaACaUCAUUGAUGa -3'
miRNA:   3'- ggaAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 163813 0.69 0.999996
Target:  5'- cUCUUAACUCCUAAagUGUCAUUa--- -3'
miRNA:   3'- -GGAAUUGAGGAUUguGCAGUAAcuac -5'
28281 3' -43.3 NC_005902.1 + 162467 0.73 0.999626
Target:  5'- uUUUAAUUCCUAAgGUGUUGUUGAUGg -3'
miRNA:   3'- gGAAUUGAGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 162331 0.68 1
Target:  5'- uUUUAAUUUUaAACACGUCAUuaaUGAUGu -3'
miRNA:   3'- gGAAUUGAGGaUUGUGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 161949 0.73 0.999494
Target:  5'- aCUUUAACUCCUAaggcaucguuaauaACACauaguaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 161775 0.75 0.996583
Target:  5'- cCUUUAACaCCUAAgGUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGaGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 157919 0.7 0.999991
Target:  5'- cCUUUAACUCCaugugucaucgaUGAUGCuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGG------------AUUGUG-----CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 156711 0.69 0.999996
Target:  5'- cCUUUAACUCUUAAgGCaUCAUcaaUGAUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 150153 0.66 1
Target:  5'- cCUUUAACaCCUAAgGUGUgGUUGAUGa -3'
miRNA:   3'- -GGAAUUGaGGAUUgUGCAgUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 149853 0.77 0.991316
Target:  5'- uCCUUaAACUCCUAAaACaUCGUUGAUGa -3'
miRNA:   3'- -GGAA-UUGAGGAUUgUGcAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.