miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 20413 0.76 0.992481
Target:  5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 20222 0.76 0.992481
Target:  5'- -gUUAACUCCUAAgGCaUCAUUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 95873 0.76 0.994174
Target:  5'- cCCUcUAACUCCUAaggcauuaucaacaACACuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGA-AUUGAGGAU--------------UGUG-----CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 137790 0.76 0.994438
Target:  5'- aCCUuuUAGCUCCUAugGCaUUAUUGAUa -3'
miRNA:   3'- -GGA--AUUGAGGAUugUGcAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 149385 0.76 0.995249
Target:  5'- -aUUAACUCCUAAaAUGUCAUcGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 20057 0.75 0.995961
Target:  5'- aUUUAACUCUUaaGACAUGUCAaUGAUGc -3'
miRNA:   3'- gGAAUUGAGGA--UUGUGCAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 161775 0.75 0.996583
Target:  5'- cCUUUAACaCCUAAgGUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGaGGAUUgUGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 104284 0.75 0.996583
Target:  5'- -gUUAACUCUUAAgGCaUCAUUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 13052 0.75 0.997124
Target:  5'- cCUUUAACUCCacaucaucaaUGACaaaGCGUCAUUGAUa -3'
miRNA:   3'- -GGAAUUGAGG----------AUUG---UGCAGUAACUAc -5'
28281 3' -43.3 NC_005902.1 + 137845 0.75 0.997592
Target:  5'- cCUUUAACUCCUAAaguaUCAUUGAUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgugcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 93718 0.75 0.997995
Target:  5'- cCCcUGACUCCUAAagUGUCAUUGAc- -3'
miRNA:   3'- -GGaAUUGAGGAUUguGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 58603 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 58404 0.74 0.998339
Target:  5'- cCUUUAACUCU--ACGCaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 165782 0.74 0.998632
Target:  5'- --aUAACUCCUAAaACaUCAUUGAUGa -3'
miRNA:   3'- ggaAUUGAGGAUUgUGcAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 170136 0.74 0.998632
Target:  5'- cCUUUAACcCCaAACACGUCGUcGGUGa -3'
miRNA:   3'- -GGAAUUGaGGaUUGUGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 49984 0.74 0.99903
Target:  5'- cCUUUAACUCCUAAggcauCAUcaauaaugcuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAUU-----GUG--------------CAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 55119 0.74 0.999089
Target:  5'- cCUUUAAUUCC--GCAuUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 161949 0.73 0.999494
Target:  5'- aCUUUAACUCCUAaggcaucguuaauaACACauaguaUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU--------------UGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 90720 0.73 0.999528
Target:  5'- cCUUUAACUCC--ACAuCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAUUGAGGauUGU-GCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 82627 0.73 0.999626
Target:  5'- uUUUAACUCCUAAgAUaUUAUUGAUGu -3'
miRNA:   3'- gGAAUUGAGGAUUgUGcAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.