miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 3' -43.3 NC_005902.1 + 82108 0.67 1
Target:  5'- aCCUuuUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 140066 0.67 1
Target:  5'- -gUUAACcCCUAACucaugGCGUCAUcaaUGAUGc -3'
miRNA:   3'- ggAAUUGaGGAUUG-----UGCAGUA---ACUAC- -5'
28281 3' -43.3 NC_005902.1 + 99188 0.68 1
Target:  5'- cCCUUAACUUCUAagGCAuUGUUAaUGAUa -3'
miRNA:   3'- -GGAAUUGAGGAU--UGU-GCAGUaACUAc -5'
28281 3' -43.3 NC_005902.1 + 17056 0.68 1
Target:  5'- aCCUuuUAACUCUaugu-UGUCAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGGauuguGCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 134346 0.66 1
Target:  5'- --cUAAUUCCUAAgAUGUCAUcaacGAUGc -3'
miRNA:   3'- ggaAUUGAGGAUUgUGCAGUAa---CUAC- -5'
28281 3' -43.3 NC_005902.1 + 123082 0.66 1
Target:  5'- cCUUUAAUUCCUAaggcaucaucaACaaugcaaaACGUCAUUGAa- -3'
miRNA:   3'- -GGAAUUGAGGAU-----------UG--------UGCAGUAACUac -5'
28281 3' -43.3 NC_005902.1 + 50416 0.67 1
Target:  5'- -gUUAAUUCCUAAgGCaUCAUcGAUGa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 28879 0.68 0.999999
Target:  5'- -aUUAAUUCCUAgggcaucaGCACuGUCAgUGAUGa -3'
miRNA:   3'- ggAAUUGAGGAU--------UGUG-CAGUaACUAC- -5'
28281 3' -43.3 NC_005902.1 + 67821 0.68 0.999999
Target:  5'- aCCUuuUAACUCCUAaaGCAuUGUCAaUGAc- -3'
miRNA:   3'- -GGA--AUUGAGGAU--UGU-GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 76000 0.69 0.999999
Target:  5'- cCUUUAAUUCCacaugucauUAACAaugcguugUGUCAUUGAUGg -3'
miRNA:   3'- -GGAAUUGAGG---------AUUGU--------GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 139815 0.68 0.999999
Target:  5'- aCCUuuUAACUCCauguugucaaUGACGCcuugcaUCAUUGAUGa -3'
miRNA:   3'- -GGA--AUUGAGG----------AUUGUGc-----AGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 11426 0.68 0.999999
Target:  5'- uCCUUAACUCUUAAgGCaUCAUcaaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUac -5'
28281 3' -43.3 NC_005902.1 + 144335 0.68 0.999999
Target:  5'- -aUUAACUCCUAAgGCaUCAaUGAUa -3'
miRNA:   3'- ggAAUUGAGGAUUgUGcAGUaACUAc -5'
28281 3' -43.3 NC_005902.1 + 110170 0.69 0.999998
Target:  5'- cCUUUAAUUCCUAaggcauugucagaauAUAaagUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAUUGAGGAU---------------UGU---GCAGUAACUAC- -5'
28281 3' -43.3 NC_005902.1 + 173180 0.69 0.999996
Target:  5'- cCCUUAACUCCUAaguuauauACACGUUu------ -3'
miRNA:   3'- -GGAAUUGAGGAU--------UGUGCAGuaacuac -5'
28281 3' -43.3 NC_005902.1 + 33259 0.69 0.999996
Target:  5'- uCUUUAACUCCUAAaguauCGUCGaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgu---GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 33387 0.69 0.999996
Target:  5'- uCUUUAACUCCUAAaguauCGUCGaUGAc- -3'
miRNA:   3'- -GGAAUUGAGGAUUgu---GCAGUaACUac -5'
28281 3' -43.3 NC_005902.1 + 163813 0.69 0.999996
Target:  5'- cUCUUAACUCCUAAagUGUCAUUa--- -3'
miRNA:   3'- -GGAAUUGAGGAUUguGCAGUAAcuac -5'
28281 3' -43.3 NC_005902.1 + 20302 0.69 0.999996
Target:  5'- ----uACUCCUAACucAUGUCAUcGAUGa -3'
miRNA:   3'- ggaauUGAGGAUUG--UGCAGUAaCUAC- -5'
28281 3' -43.3 NC_005902.1 + 156711 0.69 0.999996
Target:  5'- cCUUUAACUCUUAAgGCaUCAUcaaUGAUGu -3'
miRNA:   3'- -GGAAUUGAGGAUUgUGcAGUA---ACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.