miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 5' -42.4 NC_005902.1 + 3343 0.68 1
Target:  5'- cAUUGUCAGUGACGuauacGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 140047 0.68 1
Target:  5'- cGUCAUCAAUGAUGcaagGcgucauugacaacaUGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUACUGCua--C--------------ACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 58815 0.67 1
Target:  5'- cAUCAUCAAUGAUGc-GUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaCAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 136945 0.67 1
Target:  5'- cAUUGUCAAUGACaacaUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuacACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 50218 0.67 1
Target:  5'- uAUCAUCAAUGACacaaagcauuauuGAUGaugccuuaGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUG-------------CUACa-------CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 143922 0.66 1
Target:  5'- cAUCAUCAAUGAC--UGUGaAGUUGGGg -3'
miRNA:   3'- -UAGUAGUUACUGcuACACcUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 122823 0.7 0.999994
Target:  5'- cAUCAUCGAUGAUGcuuUGUGuuGUUAAGg -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACACcuUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 102184 0.7 0.999992
Target:  5'- cAUUAUCAAUGACGAUuuaGGAGUa--- -3'
miRNA:   3'- -UAGUAGUUACUGCUAca-CCUUAauuu -5'
28281 5' -42.4 NC_005902.1 + 71895 0.81 0.922734
Target:  5'- cAUCAUCAAUGACG-UGUuaGGAGUUAAGg -3'
miRNA:   3'- -UAGUAGUUACUGCuACA--CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 29739 0.75 0.997756
Target:  5'- cAUCAUUGAUGACaccGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuaCACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 67279 0.74 0.998762
Target:  5'- uGUUGUUGAUGAUaAUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 143761 0.74 0.998762
Target:  5'- uGUCAUUGAcaAUGAUGUGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUacUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 163778 0.74 0.999193
Target:  5'- uGUCAUCAAUGAUaAUGUuGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 158151 0.73 0.99934
Target:  5'- uAUCAUCAAUGAcacaaagcaucauCGAUGacacaUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACU-------------GCUAC-----ACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 116975 0.73 0.999597
Target:  5'- uGUCGUCAAUGAUGuuuuaGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 17020 0.72 0.999812
Target:  5'- uGUCAUCAAUGAUGccuuaGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 118930 0.71 0.999939
Target:  5'- uGUCAUUA---AUGGUGUGGAGUUAAGu -3'
miRNA:   3'- -UAGUAGUuacUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 11282 0.71 0.999955
Target:  5'- uAUCAUCAAUGAUGccuuaGGAGUUAAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 11410 0.7 0.999979
Target:  5'- cAUCAUCAAUGACauaaagcaucaacaAUGUGGAuUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGc-------------UACACCUuAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 26422 0.7 0.999988
Target:  5'- cAUCGUCAAUGAUGccuuaGGAGUUAAGg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.