miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 5' -42.4 NC_005902.1 + 55028 0.66 1
Target:  5'- uAUCGUUGAUGACagcaUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuacACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 149870 0.68 1
Target:  5'- cAUCGUUGAUGACaAUGUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 91085 0.77 0.990094
Target:  5'- cAUUAUUGAUGAUG-UGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 149173 0.67 1
Target:  5'- cAUCAUCGAUGACauuuuaGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGcuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 48201 0.66 1
Target:  5'- uAUCAUCGAUGACGccuuaGGAGcUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUaAUUU- -5'
28281 5' -42.4 NC_005902.1 + 167339 0.66 1
Target:  5'- uAUUAUCAAUGAUGcuuuaGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 75788 0.78 0.985076
Target:  5'- cAUUGUUAAUGAC-AUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 184481 0.78 0.980783
Target:  5'- cAUCAUUGAUGAUGAUGUGaAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACcUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 157933 0.68 1
Target:  5'- uGUCAUCGAUGAUGcuuUGUGucAUUGAu -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACACcuUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 58815 0.67 1
Target:  5'- cAUCAUCAAUGAUGc-GUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaCAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 29739 0.75 0.997756
Target:  5'- cAUCAUUGAUGACaccGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuaCACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 114956 0.69 0.999996
Target:  5'- uAUUAUCAAUGAUGccuUG-GGAGUUAGGg -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACaCCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 50628 0.69 0.999997
Target:  5'- uGUCAUCGAUGAUGccuuaGGAAUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 165994 0.69 0.999998
Target:  5'- uAUCAUCAAUGAUGuuuuaGGAGUUAu- -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUuu -5'
28281 5' -42.4 NC_005902.1 + 123048 0.72 0.999812
Target:  5'- -aCGUCAuUGAaaGUGUGGAAUUAAAg -3'
miRNA:   3'- uaGUAGUuACUgcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 116975 0.73 0.999597
Target:  5'- uGUCGUCAAUGAUGuuuuaGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 158151 0.73 0.99934
Target:  5'- uAUCAUCAAUGAcacaaagcaucauCGAUGacacaUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACU-------------GCUAC-----ACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 163778 0.74 0.999193
Target:  5'- uGUCAUCAAUGAUaAUGUuGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 143761 0.74 0.998762
Target:  5'- uGUCAUUGAcaAUGAUGUGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUacUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 67279 0.74 0.998762
Target:  5'- uGUUGUUGAUGAUaAUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.