Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28281 | 5' | -42.4 | NC_005902.1 | + | 76639 | 0.66 | 1 |
Target: 5'- cAUCAUCAAcaACacUGUGGAAUUAAAg -3' miRNA: 3'- -UAGUAGUUacUGcuACACCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 143922 | 0.66 | 1 |
Target: 5'- cAUCAUCAAUGAC--UGUGaAGUUGGGg -3' miRNA: 3'- -UAGUAGUUACUGcuACACcUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 50218 | 0.67 | 1 |
Target: 5'- uAUCAUCAAUGACacaaagcauuauuGAUGaugccuuaGGAGUUAAAg -3' miRNA: 3'- -UAGUAGUUACUG-------------CUACa-------CCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 136945 | 0.67 | 1 |
Target: 5'- cAUUGUCAAUGACaacaUGGAGUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGcuacACCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 58815 | 0.67 | 1 |
Target: 5'- cAUCAUCAAUGAUGc-GUaGAGUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGCuaCAcCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 50384 | 0.67 | 1 |
Target: 5'- uAUCAUCAAUGAU-AUGUGaAGUUAAc -3' miRNA: 3'- -UAGUAGUUACUGcUACACcUUAAUUu -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 140047 | 0.68 | 1 |
Target: 5'- cGUCAUCAAUGAUGcaagGcgucauugacaacaUGGAGUUAAAa -3' miRNA: 3'- -UAGUAGUUACUGCua--C--------------ACCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 99893 | 0.7 | 0.999994 |
Target: 5'- cGUCAUCA---ACaAUGUGGAAUUAAAg -3' miRNA: 3'- -UAGUAGUuacUGcUACACCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 114956 | 0.69 | 0.999996 |
Target: 5'- uAUUAUCAAUGAUGccuUG-GGAGUUAGGg -3' miRNA: 3'- -UAGUAGUUACUGCu--ACaCCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 50628 | 0.69 | 0.999997 |
Target: 5'- uGUCAUCGAUGAUGccuuaGGAAUUAAc -3' miRNA: 3'- -UAGUAGUUACUGCuaca-CCUUAAUUu -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 165994 | 0.69 | 0.999998 |
Target: 5'- uAUCAUCAAUGAUGuuuuaGGAGUUAu- -3' miRNA: 3'- -UAGUAGUUACUGCuaca-CCUUAAUuu -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 42362 | 0.69 | 0.999999 |
Target: 5'- uAUUGUCAAUGAC-AUGUuuGGAGUUAAc -3' miRNA: 3'- -UAGUAGUUACUGcUACA--CCUUAAUUu -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 106289 | 0.68 | 1 |
Target: 5'- cAUCGUUGAUGACaGUGUGaAGUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGcUACACcUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 3343 | 0.68 | 1 |
Target: 5'- cAUUGUCAGUGACGuauacGGAGUUAAu -3' miRNA: 3'- -UAGUAGUUACUGCuaca-CCUUAAUUu -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 15968 | 0.8 | 0.954221 |
Target: 5'- --uGUCGuUGAUGAUGUGGAGUUAAAg -3' miRNA: 3'- uagUAGUuACUGCUACACCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 54905 | 0.81 | 0.939798 |
Target: 5'- cAUCAUCAAUGACaAUGcGGAAUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGcUACaCCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 12840 | 0.84 | 0.828825 |
Target: 5'- uUUGUCAuUGAUGAUGUGGAGUUAAAg -3' miRNA: 3'- uAGUAGUuACUGCUACACCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 114776 | 0.89 | 0.613061 |
Target: 5'- uGUCAUCGGUGACGAUGUaGAGUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGCUACAcCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 90507 | 1.05 | 0.108934 |
Target: 5'- cAUCAUCGAUGACGAUGUGGAGUUAAAg -3' miRNA: 3'- -UAGUAGUUACUGCUACACCUUAAUUU- -5' |
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28281 | 5' | -42.4 | NC_005902.1 | + | 48201 | 0.66 | 1 |
Target: 5'- uAUCAUCGAUGACGccuuaGGAGcUAAAg -3' miRNA: 3'- -UAGUAGUUACUGCuaca-CCUUaAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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