miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 5' -42.4 NC_005902.1 + 50628 0.69 0.999997
Target:  5'- uGUCAUCGAUGAUGccuuaGGAAUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 54905 0.81 0.939798
Target:  5'- cAUCAUCAAUGACaAUGcGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACaCCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 55028 0.66 1
Target:  5'- uAUCGUUGAUGACagcaUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuacACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 58191 0.67 1
Target:  5'- cAUCAUCAAUGAUGc-GUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaCAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 58815 0.67 1
Target:  5'- cAUCAUCAAUGAUGc-GUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaCAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 66970 0.7 0.999994
Target:  5'- cAUCGUUGAUGAUG-UGUGGAGcUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuACACCUUaAUUu -5'
28281 5' -42.4 NC_005902.1 + 67279 0.74 0.998762
Target:  5'- uGUUGUUGAUGAUaAUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 71439 0.66 1
Target:  5'- cUCAUUggUGACaGUGUaGAGUUAAGg -3'
miRNA:   3'- uAGUAGuuACUGcUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 71716 1.06 0.09976
Target:  5'- cAUCAUCAAUGACGAUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 71895 0.81 0.922734
Target:  5'- cAUCAUCAAUGACG-UGUuaGGAGUUAAGg -3'
miRNA:   3'- -UAGUAGUUACUGCuACA--CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 75788 0.78 0.985076
Target:  5'- cAUUGUUAAUGAC-AUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 76560 0.83 0.872674
Target:  5'- aGUCGUUAAUGAUcAUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 76639 0.66 1
Target:  5'- cAUCAUCAAcaACacUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUacUGcuACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 90507 1.05 0.108934
Target:  5'- cAUCAUCGAUGACGAUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 91085 0.77 0.990094
Target:  5'- cAUUAUUGAUGAUG-UGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 95909 0.7 0.999994
Target:  5'- uGUCAUUGAUGACGAUauaGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUAcacCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 99893 0.7 0.999994
Target:  5'- cGUCAUCA---ACaAUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUuacUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 102184 0.7 0.999992
Target:  5'- cAUUAUCAAUGACGAUuuaGGAGUa--- -3'
miRNA:   3'- -UAGUAGUUACUGCUAca-CCUUAauuu -5'
28281 5' -42.4 NC_005902.1 + 104298 0.79 0.969201
Target:  5'- cAUCAUUGAUGACGGUGUgagguggGGggUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACA-------CCuuAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 106289 0.68 1
Target:  5'- cAUCGUUGAUGACaGUGUGaAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACcUUAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.