miRNA display CGI


Results 41 - 60 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 5' -45.8 NC_005902.1 + 3478 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 143803 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAg -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 69410 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 99651 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 163421 0.75 0.949818
Target:  5'- uGAGUaaaUAUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- -CUCAcccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 52367 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 80098 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 94183 0.75 0.949818
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 29255 0.75 0.954224
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAGg -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 45117 0.75 0.958361
Target:  5'- -uGUucGUAUAUAGCUUAGGUGUUAu -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCACAAUu -5'
28284 5' -45.8 NC_005902.1 + 71688 0.75 0.962234
Target:  5'- -----uGUAUAUAGCUUAGGUGUUAGa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 136262 0.74 0.968888
Target:  5'- uGAGUaGGUAuagcaaacaaauaUAUAGUUUAGGUGUUGAg -3'
miRNA:   3'- -CUCAcCCAU-------------AUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 31454 0.74 0.969213
Target:  5'- aAGUGaGUAUAUAGCUUAGGUaaaggGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCCA-----CAAUU- -5'
28284 5' -45.8 NC_005902.1 + 48264 0.74 0.972335
Target:  5'- --uUGuaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 34739 0.74 0.973517
Target:  5'- aGAGUGuagcaacuaaauaUAUAUAGCUUAGGUGUUAAg -3'
miRNA:   3'- -CUCACcc-----------AUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 20321 0.74 0.977881
Target:  5'- --uUGuaUAUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 104201 0.74 0.977881
Target:  5'- --uUGuuUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 127502 0.74 0.977881
Target:  5'- cGAGUGaGUAUAUAGCUUcaGUGUUAAa -3'
miRNA:   3'- -CUCACcCAUAUAUCGAAucCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 58257 0.74 0.977881
Target:  5'- cGAGUGaGUAUAUAGCUUcaGUGUUAAa -3'
miRNA:   3'- -CUCACcCAUAUAUCGAAucCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 1447 0.73 0.980324
Target:  5'- aAGUGaGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUcCACAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.